dockerImages.yml

# Copyright (c) 2020 Leiden University Medical Center
#
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# furnished to do so, subject to the following conditions:
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# The above copyright notice and this permission notice shall be included in
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# This file contains the docker images used in the pipeline.
# The containers used by default are biocontainers uploaded on quay.io.
# https://quay.io/organization/biocontainers

# The string should be formatted in the same way as utilized in a 'docker pull'
# command.

# Tools are sorted alphabetically for ease of use.

biowdl-input-converter: "quay.io/biocontainers/biowdl-input-converter:0.3.0--pyhdfd78af_0"
centrifuge: "quay.io/biocontainers/centrifuge:1.0.4_beta--h9a82719_6"
cutadapt: "quay.io/biocontainers/cutadapt:3.4--py37h73a75cf_1"
fastqc: "quay.io/biocontainers/fastqc:0.11.9--hdfd78af_1"
krona: "biocontainers/krona:v2.7.1_cv1"
multiqc: "quay.io/biocontainers/multiqc:1.10.1--pyhdfd78af_1"