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setup.py
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setup.py
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import re
import setuptools
import subprocess
import sys
try:
result = subprocess.run(
[sys.executable, "-m", "pip", "show", "pkg_utils"],
check=True, capture_output=True)
match = re.search(r'\nVersion: (.*?)\n', result.stdout.decode(), re.DOTALL)
assert match and tuple(match.group(1).split('.')) >= ('0', '0', '5')
except (subprocess.CalledProcessError, AssertionError):
subprocess.run(
[sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = 'biosimulators_utils'
dirname = os.path.dirname(__file__)
package_data = {
name: [
os.path.join('utils', 'identifiers_org.json'),
os.path.join('model_lang', 'cellml', '*.rng'),
os.path.join('viz', 'vega', '**', '*.json'),
],
}
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name, package_data_filename_patterns=package_data)
with open(os.path.join(os.path.dirname(__file__), 'README.md'), 'r') as file:
long_description = file.read()
# install package
setuptools.setup(
name=name,
version=md.version,
description=(
"Command-line program and library for reading, writing, validating "
"and executing modeling projects (COMBINE/OMEX archives with SED-ML files)."
),
long_description=long_description,
long_description_content_type='text/markdown',
url="https://github.com/biosimulators/Biosimulators_utils",
download_url='https://github.com/biosimulators/Biosimulators_utils',
author='Center for Reproducible Biomedical Modeling',
author_email="[email protected]",
license="MIT",
keywords='systems biology modeling simulation',
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
package_data=md.package_data,
install_requires=md.install_requires,
extras_require=md.extras_require,
tests_require=md.tests_require,
dependency_links=md.dependency_links,
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
entry_points={
'console_scripts': [
'biosimulators-utils = biosimulators_utils.__main__:main',
],
},
)