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1. vanheeringen-lab/ANANSE vanheeringen-lab/ANANSE Public

   Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

   Python 79 16

2. vanheeringen-lab/seq2science vanheeringen-lab/seq2science Public

   Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

   Python 156 27

3. snapseed snapseed Public

   Forked from devsystemslab/snapseed

   Python

4. wilcoxauc wilcoxauc Public

   A fast Wilcoxon rank sum test and auROC analysis python package for single cell RNA-seq

   Python 2 1

5. devsystemslab/HEOCA devsystemslab/HEOCA Public

   Jupyter Notebook 5

6. devsystemslab/sc2heoca devsystemslab/sc2heoca Public

   A method to map new scRNA-seq data to HEOCA

   Python 1