diff --git a/workflows/plot.nf b/workflows/plot.nf index 816bd31..ccd9e20 100644 --- a/workflows/plot.nf +++ b/workflows/plot.nf @@ -8,6 +8,7 @@ include { PLOT_EXINT } from "${LOCAL_MODULES}/plot.nf" include { SELECT_SPECIES_WITH_ORTHOLOGS } from "${LOCAL_MODULES}/select_species.nf" include { SUBSET_BEST_HITS } from "${LOCAL_MODULES}/subset_best.nf" include { SUBSET_INPUT_FILES } from "${LOCAL_MODULES}/subset_input.nf" +include { DERIVE_ORDERED_SPECIES } from "${LOCAL_MODULES}/derive_species.nf" workflow PLOT { take: @@ -141,7 +142,7 @@ workflow PLOT { } else { all_species = Channel - .fromFilePairs(annotations, size: 1) + .fromFilePairs(annotations_path, size: 1) .map{"${it[0]}".toString()}.flatMap().collect().map{it -> it.join(",")} DERIVE_ORDERED_SPECIES(