standalone.yml

# Based on
# https://github.com/fedarko/pyfastg/blob/master/.github/workflows/main.yml
name: Standalone CI
on: [push, pull_request]
jobs:
  build:
    runs-on: ubuntu-latest

    strategy:
      matrix:
        python-version: [3.6, 3.7, 3.8, 3.9]

    steps:

      - name: Check out code
        uses: actions/checkout@v3

      # https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v3
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install Cython and NumPy
        run: pip install cython "numpy >= 1.12.0"

      - name: Install Qurro (and its pip dependencies)
        run: pip install -e .[dev]

      - name: Install Black, also (no QIIME 2 to worry about conflicts with)
        run: pip install "black >= 22.3.0"
          
      - name: Set up Node.js
        uses: actions/setup-node@v1

      - name: Install Qurro's Node.js development dependencies
        run: npm install -g mocha-headless-chrome nyc prettier@2.0.5 jshint

      - name: Run tests
        run: |
          make pytest_standalone
          make jstest

      - name: Lint and stylecheck (including using Black to check Python code)
        run: make stylecheck

      # NOTE: For now, we only submit coverage reports from the QIIME 2 CI,
      # since the tests that that CI runs are a superset of those ran by this
      # "standalone" CI. (Also, Codecov wasn't merging them, which caused
      # coverage to be underreported.)
      # - name: Upload code coverage information to Codecov
      #   uses: codecov/codecov-action@v2