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Use new bash script support for Songbird #40

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gibsramen opened this issue May 25, 2023 · 0 comments
Open

Use new bash script support for Songbird #40

gibsramen opened this issue May 25, 2023 · 0 comments

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@gibsramen
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gibsramen commented May 25, 2023

Currently, we are calling Songbird from the rule itself. Would be better and consistent with the other methods if we made use of Snakemake's new(ish) support for bash scripts.

https://github.com/gibsramen/qadabra/blob/547f0732345d734c39fac63ba82b1b9b91a5b567/qadabra/workflow/rules/diffab.smk#L86-L99

https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#bash

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