From 7eccac92c4755e5b0f78e2991c5abdcbfea4ca43 Mon Sep 17 00:00:00 2001
From: Gibraan Rahman <grahman@eng.ucsd.edu>
Date: Sun, 21 Jan 2024 15:36:46 -0800
Subject: [PATCH 1/2] pin dependences for default env

---
 qadabra/workflow/envs/qadabra-default.yaml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/qadabra/workflow/envs/qadabra-default.yaml b/qadabra/workflow/envs/qadabra-default.yaml
index 3d84361..5baa982 100644
--- a/qadabra/workflow/envs/qadabra-default.yaml
+++ b/qadabra/workflow/envs/qadabra-default.yaml
@@ -2,13 +2,13 @@ channels:
     - conda-forge
     - bioconda
 dependencies:
-    - pandas
-    - numpy
-    - matplotlib
-    - seaborn
-    - scipy
-    - scikit-bio
-    - scikit-learn
-    - bokeh
-    - biom-format
-    - upsetplot
+    - pandas==2.20
+    - numpy==1.26.3
+    - matplotlib==3.8.2
+    - seaborn==0.13.1
+    - scipy==1.11.4
+    - scikit-bio==0.5.8
+    - scikit-learn==1.4.0
+    - bokeh==3.3.3
+    - biom-format==2.1.15
+    - upsetplot==0.8.0

From e61a5c1670b04514f5243db408e900f7feac7e63 Mon Sep 17 00:00:00 2001
From: Gibraan Rahman <grahman@eng.ucsd.edu>
Date: Sun, 21 Jan 2024 15:45:41 -0800
Subject: [PATCH 2/2] fix typo in pandas version

---
 qadabra/workflow/envs/qadabra-default.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/qadabra/workflow/envs/qadabra-default.yaml b/qadabra/workflow/envs/qadabra-default.yaml
index 5baa982..a3cf435 100644
--- a/qadabra/workflow/envs/qadabra-default.yaml
+++ b/qadabra/workflow/envs/qadabra-default.yaml
@@ -2,7 +2,7 @@ channels:
     - conda-forge
     - bioconda
 dependencies:
-    - pandas==2.20
+    - pandas==2.2.0
     - numpy==1.26.3
     - matplotlib==3.8.2
     - seaborn==0.13.1