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Balance test #281

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mortonjt opened this issue Sep 10, 2019 · 1 comment

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mortonjt commented Sep 10, 2019

One thing that could be useful is a very simple command that allows for a balance test.

It would look something like this

Bootstrap the samples (via multinomial sampling)
Select microbes for numerator / denominator (user specified)
Run statistical test and count up the occurrences to calculate CI and pvalues.

Now that microbes can be directly selected from qurro, this should be easier to implement. CC @fedarko

Relevant issue biocore/qurro#222

Collaborator Author

mortonjt commented Dec 25, 2020

This is the paper worth citing for this : https://www.biorxiv.org/content/10.1101/134536v2

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