From ebc6f034c0a573e92fd720ef8679a165415d5bba Mon Sep 17 00:00:00 2001
From: Gibs <grahman@eng.ucsd.edu>
Date: Fri, 22 Jul 2022 13:20:48 -0700
Subject: [PATCH] Update to v0.1.0 (#78)

---
 birdman/__init__.py |  2 ++
 setup.py            | 18 ++++++++++++++----
 2 files changed, 16 insertions(+), 4 deletions(-)

diff --git a/birdman/__init__.py b/birdman/__init__.py
index e59c7cb..15e2999 100644
--- a/birdman/__init__.py
+++ b/birdman/__init__.py
@@ -3,6 +3,8 @@
 from .default_models import (NegativeBinomial, NegativeBinomialLME,
                              NegativeBinomialSingle)
 
+__version__ = "0.1.0"
+
 __all__ = ["BaseModel", "TableModel", "SingleFeatureModel", "ModelIterator",
            "NegativeBinomial", "NegativeBinomialSingle",
            "NegativeBinomialLME"]
diff --git a/setup.py b/setup.py
index 45f2b6f..22a03e5 100644
--- a/setup.py
+++ b/setup.py
@@ -1,7 +1,16 @@
 # Inspired by the EMPress setup.py file
+import ast
+import re
 from setuptools import find_packages, setup
 
-__version__ = "0.0.4"
+# version parsing from __init__ pulled from Flask's setup.py
+# https://github.com/mitsuhiko/flask/blob/master/setup.py
+_version_re = re.compile(r"__version__\s+=\s+(.*)")
+
+with open("birdman/__init__.py", "rb") as f:
+    hit = _version_re.search(f.read().decode("utf-8")).group(1)
+    version = str(ast.literal_eval(hit))
+
 
 classifiers = """
     Development Status :: 3 - Alpha
@@ -19,7 +28,7 @@
     "inference"
 )
 
-with open('README.md') as f:
+with open("README.md") as f:
     long_description = f.read()
 
 setup(
@@ -30,14 +39,15 @@
     long_description=long_description,
     long_description_content_type="text/markdown",
     url="https://github.com/gibsramen/BIRDMAn",
-    version=__version__,
-    license='BSD-3-Clause',
+    version=version,
+    license="BSD-3-Clause",
     packages=find_packages(),
     include_package_data=True,
     package_data={"": ["*.stan"]},
     install_requires=[
         "numpy",
         "cmdstanpy>=1.0.1",
+        "scipy",
         "biom-format",
         "patsy",
         "xarray",