diff --git a/README.md b/README.md index 0ce171b..46e777d 100644 --- a/README.md +++ b/README.md @@ -9,6 +9,8 @@ See the [documentation](https://birdman.readthedocs.io/en/stable/?badge=stable) for details on usage. +For an example of running BIRDMAn - see this [Google Colab notebook](https://colab.research.google.com/drive/1zT4eIgiz0Jl5TVmttE3gwWnrhNlPeYDc?usp=sharing). + ## Installation Currently BIRDMAn requires Python 3.8 or higher. @@ -16,6 +18,6 @@ Currently BIRDMAn requires Python 3.8 or higher. We recommend using [mamba](https://github.com/mamba-org/mamba) for installation of dependencies. ```bash -conda install -c conda-forge biom-format patsy xarray arviz cmdstanpy +mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpy pip install birdman ``` diff --git a/birdman/__init__.py b/birdman/__init__.py index 1aa5dda..ab37860 100644 --- a/birdman/__init__.py +++ b/birdman/__init__.py @@ -3,7 +3,7 @@ from .default_models import (NegativeBinomial, NegativeBinomialLME, NegativeBinomialSingle, NegativeBinomialLMESingle) -__version__ = "0.1.0" +__version__ = "0.2.0" __all__ = ["BaseModel", "TableModel", "SingleFeatureModel", "ModelIterator", "NegativeBinomial", "NegativeBinomialSingle",