diff --git a/recipes/r-coloc/meta.yaml b/recipes/r-coloc/meta.yaml index a7bc4cdf0cb57..0b224f6cafb87 100644 --- a/recipes/r-coloc/meta.yaml +++ b/recipes/r-coloc/meta.yaml @@ -33,7 +33,7 @@ requirements: - r-flashclust - r-ggplot2 - r-reshape - - r-snpstats + - bioconductor-snpstats - r-speedglm run: @@ -42,7 +42,7 @@ requirements: - r-flashclust - r-ggplot2 - r-reshape - - r-snpstats + - bioconductor-snpstats - r-speedglm test: diff --git a/recipes/r-metama/meta.yaml b/recipes/r-metama/meta.yaml index c862b24b526e3..e3343095d7e00 100644 --- a/recipes/r-metama/meta.yaml +++ b/recipes/r-metama/meta.yaml @@ -29,12 +29,12 @@ requirements: host: - r-base - r-smvar - - r-limma + - bioconductor-limma run: - r-base - r-smvar - - r-limma + - bioconductor-limma test: commands: diff --git a/recipes/r-mutoss/meta.yaml b/recipes/r-mutoss/meta.yaml index f1ad25a29eac4..854a7af4d4f28 100644 --- a/recipes/r-mutoss/meta.yaml +++ b/recipes/r-mutoss/meta.yaml @@ -30,14 +30,14 @@ requirements: host: - r-base - r-multcomp >=1.1_0 - - r-multtest >=2.2.0 + - bioconductor-multtest >=2.2.0 - r-mvtnorm - r-plotrix run: - r-base - r-multcomp >=1.1_0 - - r-multtest >=2.2.0 + - bioconductor-multtest >=2.2.0 - r-mvtnorm - r-plotrix diff --git a/recipes/r-nanostringnorm/meta.yaml b/recipes/r-nanostringnorm/meta.yaml index 71e5ac411c969..219564a41d79b 100644 --- a/recipes/r-nanostringnorm/meta.yaml +++ b/recipes/r-nanostringnorm/meta.yaml @@ -15,10 +15,8 @@ source: build: merge_build_host: True # [win] - number: 0 skip: true # [win32] - rpaths: - lib/R/lib/ - lib/ @@ -26,18 +24,16 @@ build: requirements: build: - {{posix}}zip # [win] - host: - r-base - r-xml >=3.98_1.5 - r-gdata >=2.8.2 - - r-vsn >=3.22.0 - + - bioconductor-vsn >=3.22.0 run: - r-base - r-xml >=3.98_1.5 - r-gdata >=2.8.2 - - r-vsn >=3.22.0 + - bioconductor-vsn >=3.22.0 test: commands: @@ -51,8 +47,6 @@ about: summary: A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data. license_family: GPL2 - license_file: '{{ environ["PREFIX"] }}\/lib\/R\/share\/licenses\/GPL-2' # [unix] - license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-2' # [win] extra: recipe-maintainers: - MathiasHaudgaard diff --git a/recipes/r-structssi/meta.yaml b/recipes/r-structssi/meta.yaml index 9b1fa4f6f65fa..2068526a8912b 100644 --- a/recipes/r-structssi/meta.yaml +++ b/recipes/r-structssi/meta.yaml @@ -15,9 +15,7 @@ source: build: merge_build_host: True # [win] - number: 2 - rpaths: - lib/R/lib/ - lib/ @@ -25,26 +23,23 @@ build: requirements: build: - {{posix}}zip # [win] - host: - r-base - r-ggplot2 - r-igraph - - r-multtest + - bioconductor-multtest - r-reshape2 - r-rjson - run: - r-base - r-ggplot2 - r-igraph - - r-multtest + - bioconductor-multtest - r-reshape2 - r-rjson test: commands: - - $R -e "library('structSSI')" # [not win] - "\"%R%\" -e \"library('structSSI')\"" # [win] @@ -54,8 +49,6 @@ about: summary: Performs multiple testing corrections that take specific structure of hypotheses into account. license_family: GPL2 - license_file: '{{ environ["PREFIX"] }}\/lib\/R\/share\/licenses\/GPL-2' # [unix] - license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-2' # [win] extra: recipe-maintainers: - MathiasHaudgaard diff --git a/recipes/r-tcga2stat/meta.yaml b/recipes/r-tcga2stat/meta.yaml index 79b9c9ad69c94..5340ff89756bd 100644 --- a/recipes/r-tcga2stat/meta.yaml +++ b/recipes/r-tcga2stat/meta.yaml @@ -15,9 +15,7 @@ source: build: merge_build_host: True # [win] - number: 2 - rpaths: - lib/R/lib/ - lib/ @@ -25,20 +23,17 @@ build: requirements: build: - {{posix}}zip # [win] - host: - r-base - - r-cntools + - bioconductor-cntools - r-xml - run: - r-base - - r-cntools + - bioconductor-cntools - r-xml test: commands: - - $R -e "library('TCGA2STAT')" # [not win] - "\"%R%\" -e \"library('TCGA2STAT')\"" # [win] @@ -48,8 +43,6 @@ about: summary: Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment. license_family: GPL2 - license_file: '{{ environ["PREFIX"] }}\/lib\/R\/share\/licenses\/GPL-2' # [unix] - license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-2' # [win] extra: recipe-maintainers: - MathiasHaudgaard