From 4b210129116ddca87018889fe9a1b9430c5248e0 Mon Sep 17 00:00:00 2001
From: Will Nickols <willnickols@college.harvard.edu>
Date: Mon, 6 Jan 2025 14:43:28 -0600
Subject: [PATCH] Update maaslin3.R

---
 R/maaslin3.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/maaslin3.R b/R/maaslin3.R
index 830de84..c1fd56a 100755
--- a/R/maaslin3.R
+++ b/R/maaslin3.R
@@ -940,7 +940,7 @@ maaslin_read_data <- function(input_data,
                 it must have appropriate rownames!")
         }
         data <- as.data.frame(input_data) # in case it's a tibble or something
-    } else if (inherits(metadata, 'DataFrame')) {
+    } else if (inherits(input_data, 'DataFrame')) {
         data <- as.data.frame(input_data) # If it's BioC's DataFrame
     } else if (is.matrix(input_data)) {
         logging::logwarn("Input is a matrix,