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GridViewerTest.java
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GridViewerTest.java
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/*-
* #%L
* BigDataViewer core classes with minimal dependencies.
* %%
* Copyright (C) 2012 - 2023 BigDataViewer developers.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package bdv.viewer.location;
import bdv.ui.UIUtils;
import java.io.IOException;
import java.util.ArrayList;
import java.util.function.BiConsumer;
import mpicbg.spim.data.SpimDataException;
import bdv.BigDataViewer;
import bdv.cache.CacheControl;
import bdv.export.ProgressWriterConsole;
import bdv.tools.brightness.ConverterSetup;
import bdv.tools.brightness.RealARGBColorConverterSetup;
import bdv.util.RealRandomAccessibleSource;
import bdv.viewer.SourceAndConverter;
import bdv.viewer.ViewerOptions;
import net.imglib2.FinalInterval;
import net.imglib2.Interval;
import net.imglib2.RealLocalizable;
import net.imglib2.display.RealARGBColorConverter;
import net.imglib2.position.FunctionRealRandomAccessible;
import net.imglib2.realtransform.AffineTransform3D;
import net.imglib2.type.numeric.integer.IntType;
import static java.lang.Math.PI;
public class GridViewerTest {
public static void main(String[] args)
throws IOException, SpimDataException {
System.setProperty( "apple.laf.useScreenMenuBar", "true" );
// System.setProperty( "apple.awt.application.appearance", "system" );
UIUtils.installFlatLafInfos();
final ArrayList<ConverterSetup> converterSetups = new ArrayList<>();
final ArrayList<SourceAndConverter<?>> sources = new ArrayList<>();
final CacheControl cache = new CacheControl.Dummy();
final ProgressWriterConsole progressWriter = new ProgressWriterConsole();
final ViewerOptions viewerOptions = ViewerOptions.options();
final String[] sourceNames = {
"Grid A",
"Grid B has a name longer than 20 characters",
"Grid C",
};
for (int i = 0; i < sourceNames.length; i++) {
final RealARGBColorConverter<IntType> converter = RealARGBColorConverter.create(new IntType(), 0, 127);
final ConverterSetup converterSetup = new RealARGBColorConverterSetup(i, converter);
converterSetups.add(converterSetup);
final int numDimensions = 3; // (i < 3) ? 3 : 2;
final int size = 100 * (i + 1);
final RealRandomAccessibleSource<IntType> source = buildGridSource(numDimensions, sourceNames[i], size, i);
final SourceAndConverter<IntType> soc = new SourceAndConverter<>(source, converter);
sources.add(soc);
}
BigDataViewer.open(converterSetups,
sources,
1,
cache,
"Viewer Example",
progressWriter,
viewerOptions);
}
public static BiConsumer<RealLocalizable, IntType> GRID_FUNCTION = (pos, pixels) -> {
int i = 0;
int xPos = (int) Math.round(pos.getDoublePosition(0));
int yPos = (int) Math.round(pos.getDoublePosition(1));
if ((xPos == 0) || (yPos == 0)) {
i = 120;
} else {
if (xPos % 10 == 0) {
i = 60;
} else if (yPos % 10 == 0) {
i = 30;
}
}
pixels.set(i);
};
public static RealRandomAccessibleSource<IntType> buildGridSource(final int numDimensions,
final String name,
final int size,
final int i ) {
final FunctionRealRandomAccessible<IntType> grid =
new FunctionRealRandomAccessible<>(numDimensions, GRID_FUNCTION, IntType::new);
final long[] min = new long[numDimensions];
final long[] max = new long[numDimensions];
for (int d = 0; d < numDimensions; d++) {
min[d] = -size;
max[d] = size;
}
return new RealRandomAccessibleSource<IntType>(grid, new IntType(), name) {
private final Interval interval = new FinalInterval(min, max);
@Override
public Interval getInterval(final int t,
final int level) {
return interval;
}
@Override
public void getSourceTransform( final int t, final int level, final AffineTransform3D transform )
{
transform.identity();
if ( i == 1 ) {
transform.scale( 2.3 );
transform.rotate( 2, 30 * PI / 180.0 );
transform.rotate( 1, 10 * PI / 180.0 );
transform.rotate( 0, 60 * PI / 180.0 );
transform.translate( -400, 70, 80 );
}
}
};
}
}