diff --git a/Dockerfile b/Dockerfile index 7aa730e..2a8c496 100644 --- a/Dockerfile +++ b/Dockerfile @@ -51,9 +51,6 @@ RUN git clone https://github.com/Xinglab/rmats-turbo.git WORKDIR rmats-turbo RUN ./build_rmats -# environment variables -ENV PATH="$PATH:/rmats-turbo:/meme/bin:/usr/local/bin" - # Install the splicekit package WORKDIR /usr/splicekit COPY . /usr/splicekit @@ -61,5 +58,13 @@ COPY . /usr/splicekit # Install the package from the current repository RUN pip install . +# Install STAR read aligner +WORKDIR / +RUN wget https://github.com/alexdobin/STAR/archive/2.7.11b.tar.gz +RUN tar -xzf 2.7.11b.tar.gz + +# environment variables +ENV PATH="$PATH:/rmats-turbo:/meme/bin:/usr/local/bin:/STAR-2.7.11b/bin/Linux_x86_64" + # Run the application CMD ["splicekit"]