diff --git a/man/designit-package.Rd b/man/designit-package.Rd index 9fcec736..3455a578 100644 --- a/man/designit-package.Rd +++ b/man/designit-package.Rd @@ -6,7 +6,7 @@ \alias{designit-package} \title{designit: Blocking and Randomization for Experimental Design} \description{ -Reducing batch effect by intelligently assigning samples to batches. Batch-effect have a strong influence in data analysis, especially when samples-to-batches assignment is coinciding with contrast groups. By defining your batch container and a scoring function reflecting the contrasts, you can assign samples in such a way that the potential batch-effect has minimal effect on the comparison of interest. +This package provides a method for intelligently assigning samples to batches in order to reduce batch effects. Batch effects can have a significant impact on data analysis, especially when the assignment of samples to batches coincides with the contrast groups being studied. By defining a batch container and a scoring function that reflects the contrasts, this package allows users to assign samples in a way that minimizes the potential impact of batch effects on the comparison of interest. Among other functionality, we provide an implementation for OSAT score by Yan et al. (2012, \doi{10.1186/1471-2164-13-689}). } \seealso{ Useful links: @@ -24,6 +24,7 @@ Authors: \itemize{ \item Juliane Siebourg-Polster \email{juliane.siebourg-polster@roche.com} (\href{https://orcid.org/0000-0002-1759-3223}{ORCID}) [copyright holder] \item Guido Steiner \email{guido.steiner@roche.com} [copyright holder] + \item Jitao David Zhang \email{jitao_david.zhang@roche.com} (\href{https://orcid.org/0000-0002-3085-0909}{ORCID}) [copyright holder] \item Balazs Banfai \email{balazs.banfai@roche.com} (\href{https://orcid.org/0000-0003-0422-7977}{ORCID}) [copyright holder] } diff --git a/man/plot_plate.Rd b/man/plot_plate.Rd index 24a53ce5..86eb9027 100644 --- a/man/plot_plate.Rd +++ b/man/plot_plate.Rd @@ -77,13 +77,11 @@ plot_plate(bc$get_samples(), .color = Treatment, .alpha = Timepoint ) -\dontrun{ plot_plate(bc$get_samples(), plate = plate, column = column, row = row, .color = Treatment, .pattern = Timepoint ) } -} \author{ siebourj }