diff --git a/README.md b/README.md index a995826..290acf3 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# causal-cmd v0.1.1 +# causal-cmd v0.1.2 ## Introduction @@ -28,7 +28,7 @@ java -jar causal-cmd-0.1.1-jar-with-dependencies.jar And you'll see the following instructions: ``` -usage: java -jar causal-cmd-0.1.1.jar --algorithm | --simulate-data [--version] +usage: java -jar causal-cmd-0.1.2.jar --algorithm | --simulate-data [--version] --algorithm FGESc, FGESd, GFCIc, GFCId --simulate-data sem-rand-fwd, bayes-net-rand-fwd --version Show software version. @@ -125,7 +125,7 @@ The GFCI algorithm has additional edge types: ## Complete Usage Guide ``` -usage: java -jar causal-cmd-0.1.1.jar --algorithm | --simulate-data [--version] +usage: java -jar causal-cmd-0.1.2.jar --algorithm | --simulate-data [--version] --algorithm FGESc, FGESd, GFCIc, GFCId --simulate-data sem-rand-fwd, bayes-net-rand-fwd --version Show software version. @@ -136,7 +136,7 @@ You can use the `--algorithm ` parameter to see specific algorithm usage in ### FGESc ``` -usage: java -jar causal-cmd-0.1.1.jar --algorithm FGESc [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--penalty-discount ] [--skip-latest] [--skip-nonzero-variance] [--skip-unique-var-name] [--tetrad-graph-json] [--thread ] [--verbose] +usage: java -jar causal-cmd-0.1.2.jar --algorithm FGESc [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--penalty-discount ] [--skip-latest] [--skip-nonzero-variance] [--skip-unique-var-name] [--tetrad-graph-json] [--thread ] [--verbose] -d,--delimiter Data delimiter either comma, semicolon, space, colon, or tab. Default: comma for *.csv, else tab. --exclude-variables A file containing variables to exclude. -f,--data Data file. @@ -160,7 +160,7 @@ usage: java -jar causal-cmd-0.1.1.jar --algorithm FGESc [-d ] [--exclude-va ### FGESd ``` -usage: java -jar causal-cmd-0.1.1.jar --algorithm FGESd [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--sample-prior ] [--skip-category-limit] [--skip-latest] [--skip-unique-var-name] [--structure-prior ] [--tetrad-graph-json] [--thread ] [--verbose] +usage: java -jar causal-cmd-0.1.2.jar --algorithm FGESd [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--sample-prior ] [--skip-category-limit] [--skip-latest] [--skip-unique-var-name] [--structure-prior ] [--tetrad-graph-json] [--thread ] [--verbose] -d,--delimiter Data delimiter either comma, semicolon, space, colon, or tab. Default: comma for *.csv, else tab. --exclude-variables A file containing variables to exclude. -f,--data Data file. @@ -185,7 +185,7 @@ usage: java -jar causal-cmd-0.1.1.jar --algorithm FGESd [-d ] [--exclude-va ### GFCIc ``` -usage: java -jar causal-cmd-0.1.1.jar --algorithm GFCIc [--alpha ] [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--penalty-discount ] [--skip-latest] [--skip-nonzero-variance] [--skip-unique-var-name] [--tetrad-graph-json] [--thread ] [--verbose] +usage: java -jar causal-cmd-0.1.2.jar --algorithm GFCIc [--alpha ] [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--penalty-discount ] [--skip-latest] [--skip-nonzero-variance] [--skip-unique-var-name] [--tetrad-graph-json] [--thread ] [--verbose] --alpha Cutoff for p values (alpha). Default is 0.01. -d,--delimiter Data delimiter either comma, semicolon, space, colon, or tab. Default: comma for *.csv, else tab. --exclude-variables A file containing variables to exclude. @@ -210,7 +210,7 @@ usage: java -jar causal-cmd-0.1.1.jar --algorithm GFCIc [--alpha ] [-d ] [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--sample-prior ] [--skip-category-limit] [--skip-latest] [--skip-unique-var-name] [--structure-prior ] [--tetrad-graph-json] [--thread ] [--verbose] +usage: java -jar causal-cmd-0.1.2.jar --algorithm GFCId [--alpha ] [-d ] [--exclude-variables ] -f [--faithfulness-assumed] [--help] [--json] [--knowledge ] [--max-degree ] [--no-validation-output] [-o ] [--output-prefix ] [--sample-prior ] [--skip-category-limit] [--skip-latest] [--skip-unique-var-name] [--structure-prior ] [--tetrad-graph-json] [--thread ] [--verbose] --alpha Cutoff for p values (alpha). Default is 0.01. -d,--delimiter Data delimiter either comma, semicolon, space, colon, or tab. Default: comma for *.csv, else tab. --exclude-variables A file containing variables to exclude. diff --git a/pom.xml b/pom.xml index c276536..98a1555 100644 --- a/pom.xml +++ b/pom.xml @@ -3,7 +3,7 @@ 4.0.0 edu.pitt.dbmi causal-cmd - 0.1.1 + 0.1.2-SNAPSHOT jar UTF-8 @@ -125,7 +125,7 @@ edu.cmu tetrad-lib - 6.0.1-SNAPSHOT + 6.2.0 junit