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config.py
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import os
BASE_DIR = os.path.dirname(os.path.abspath(__file__))
INPUT_FOLDER = os.path.join(BASE_DIR, "input")
OUTPUT_FOLDER = os.path.join(BASE_DIR, "output_V2")
LOGS_FOLDER = os.path.join(BASE_DIR, "logs")
STDERR_FOLDER = os.path.join(LOGS_FOLDER, "e")
STDOUT_FOLDER = os.path.join(LOGS_FOLDER, "o")
DATA_FOLDER = os.path.join(BASE_DIR, "data")
MOLS_FOLDER = os.path.join(DATA_FOLDER, "bound_mols")
INTERS_FOLDER = os.path.join(DATA_FOLDER, "bound_mol_inters")
EXP_FOLDER = os.path.join(DATA_FOLDER, "exp")
MATS_FOLDER = os.path.join(DATA_FOLDER, "supp_mats")
SEGMENT_FOLDER = os.path.join(DATA_FOLDER, "segments")
STRUCTURE_FOLDER = os.path.join(DATA_FOLDER, "structures")
ASYM_FOLDER = os.path.join(STRUCTURE_FOLDER, "asymmetric")
ASSEMBLY_FOLDER = os.path.join(STRUCTURE_FOLDER, "assembly")
CHAIN_REMAPPING_FOLDER = os.path.join(DATA_FOLDER, "chain_remapping")
CIF_SIFTS_FOLDER = os.path.join(DATA_FOLDER, "cif_sifts")