From 858cc098de7456088e4f01479c5cd7ee5d51bb59 Mon Sep 17 00:00:00 2001
From: anmol thapar <mr.anmolthapar@gmail.com>
Date: Thu, 16 Jan 2025 10:09:21 +0000
Subject: [PATCH] unit + integration tests
---
.github/workflows/playwrightCI.yml | 4 +--
app/client-v2/src/__tests__/App.spec.ts | 1 -
.../src/__tests__/stores/projectStore.spec.ts | 28 ++++++++++++++++++-
.../__tests__/utils/projectCsvUtils.spec.ts | 10 +++----
app/server/tests/integration/testSample.ts | 10 +++++++
5 files changed, 44 insertions(+), 9 deletions(-)
diff --git a/.github/workflows/playwrightCI.yml b/.github/workflows/playwrightCI.yml
index c2212dffb..f049ec3b3 100644
--- a/.github/workflows/playwrightCI.yml
+++ b/.github/workflows/playwrightCI.yml
@@ -12,7 +12,7 @@ on:
jobs:
playwright-tests:
timeout-minutes: 60
- runs-on: ubuntu-22.04
+ runs-on: ubuntu-latest
env:
STORAGE_PATH: ${{ github.workspace }}/storage/dbs
strategy:
@@ -75,7 +75,7 @@ jobs:
if: ${{ !cancelled() }}
needs: [playwright-tests]
- runs-on: ubuntu-22.04
+ runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-node@v4
diff --git a/app/client-v2/src/__tests__/App.spec.ts b/app/client-v2/src/__tests__/App.spec.ts
index 97c1e9867..abcb381fc 100644
--- a/app/client-v2/src/__tests__/App.spec.ts
+++ b/app/client-v2/src/__tests__/App.spec.ts
@@ -4,7 +4,6 @@ import { createTestingPinia } from "@pinia/testing";
import { render, screen } from "@testing-library/vue";
import { defineComponent } from "vue";
import { createRouter, createWebHistory } from "vue-router";
-import PrimeVue from "primevue/config";
const mockedThemeValues = {
setInitialTheme: vitest.fn(),
diff --git a/app/client-v2/src/__tests__/stores/projectStore.spec.ts b/app/client-v2/src/__tests__/stores/projectStore.spec.ts
index 5a10f1668..da991b487 100644
--- a/app/client-v2/src/__tests__/stores/projectStore.spec.ts
+++ b/app/client-v2/src/__tests__/stores/projectStore.spec.ts
@@ -698,7 +698,33 @@ describe("projectStore", () => {
[MOCK_PROJECT_SAMPLES[0].hash]: MOCK_PROJECT_SAMPLES[0].sketch,
[MOCK_PROJECT_SAMPLES[1].hash]: MOCK_PROJECT_SAMPLES[1].sketch,
[MOCK_PROJECT_SAMPLES[2].hash]: MOCK_PROJECT_SAMPLES[2].sketch
- }
+ },
+ amrForMetadataCsv: [
+ {
+ "Chloramphenicol Resistance": "Probably",
+ "Cotrim Resistance": "Probably not",
+ "Erythromycin Resistance": "Probably not",
+ ID: "sample1-test-hash",
+ "Penicillin Resistance": "Unlikely",
+ "Tetracycline Resistance": "Highly unlikely"
+ },
+ {
+ "Chloramphenicol Resistance": "Probably",
+ "Cotrim Resistance": "Almost certainly",
+ "Erythromycin Resistance": "Almost certainly",
+ ID: "sample2-test-hash",
+ "Penicillin Resistance": "Highly unlikely",
+ "Tetracycline Resistance": "Highly unlikely"
+ },
+ {
+ "Chloramphenicol Resistance": "Probably",
+ "Cotrim Resistance": "Unlikely",
+ "Erythromycin Resistance": "Probably not",
+ ID: "sample3-test-hash",
+ "Penicillin Resistance": "Probably",
+ "Tetracycline Resistance": "Highly unlikely"
+ }
+ ]
});
});
it("should get download url & download when downloadZip is called", async () => {
diff --git a/app/client-v2/src/__tests__/utils/projectCsvUtils.spec.ts b/app/client-v2/src/__tests__/utils/projectCsvUtils.spec.ts
index f81117a8d..0848b6ed9 100644
--- a/app/client-v2/src/__tests__/utils/projectCsvUtils.spec.ts
+++ b/app/client-v2/src/__tests__/utils/projectCsvUtils.spec.ts
@@ -53,11 +53,11 @@ describe("projectCsvUtils", () => {
const result = convertAmrForCsv(amr);
expect(result).toEqual({
- Penicillin: "word",
- Chloramphenicol: "word",
- Erythromycin: "word",
- Tetracycline: "word",
- Cotrim: "word"
+ "Penicillin Resistance": "word",
+ "Chloramphenicol Resistance": "word",
+ "Erythromycin Resistance": "word",
+ "Tetracycline Resistance": "word",
+ "Cotrim Resistance": "word"
});
});
});
diff --git a/app/server/tests/integration/testSample.ts b/app/server/tests/integration/testSample.ts
index 0b1ffa881..c3e3ecbb8 100644
--- a/app/server/tests/integration/testSample.ts
+++ b/app/server/tests/integration/testSample.ts
@@ -13135,4 +13135,14 @@ export const testSample = (
},
},
names: { fd38a3bc7197390fd3734240a67fb515: "7622_5#78.fa" },
+ amrForMetadataCsv: [
+ {
+ ID: "fd38a3bc7197390fd3734240a67fb515",
+ "Penicillin Resistance": "Highly unlikely",
+ "Chloramphenicol Resistance": "Unsure",
+ "Erythromycin Resistance": "Highly unlikely",
+ "Tetracycline Resistance": "Almost certainly",
+ "Cotrim Resistance": "Highly likely",
+ },
+ ],
});