From 50b2688b911c818b43489cf0232952e8c49dab50 Mon Sep 17 00:00:00 2001 From: John Lees Date: Fri, 4 Dec 2020 15:16:06 +0000 Subject: [PATCH 1/2] Remove all requirements from setup.py --- setup.py | 7 ------- 1 file changed, 7 deletions(-) diff --git a/setup.py b/setup.py index ace1c84e..bbef0975 100644 --- a/setup.py +++ b/setup.py @@ -69,12 +69,5 @@ def find_version(*file_paths): 'scripts/poppunk_add_weights.py', 'scripts/poppunk_easy_run.py', 'scripts/poppunk_pickle_fix.py'], - install_requires=['numpy', - 'scipy', - 'scikit-learn', - 'DendroPy', - 'pandas', - 'matplotlib', - 'hdbscan'], test_suite="test", ) From d0a6a1cea75de241761ab17d82dd13abc5635017 Mon Sep 17 00:00:00 2001 From: John Lees Date: Fri, 4 Dec 2020 15:28:56 +0000 Subject: [PATCH 2/2] Remove dependencies from docs setup --- docs/setup.py | 7 ------- environment.yml | 3 +-- 2 files changed, 1 insertion(+), 9 deletions(-) diff --git a/docs/setup.py b/docs/setup.py index 455a5b45..8c3bb63b 100644 --- a/docs/setup.py +++ b/docs/setup.py @@ -65,12 +65,5 @@ def find_version(*file_paths): 'scripts/poppunk_calculate_silhouette.py', 'scripts/poppunk_extract_distances.py', 'scripts/poppunk_pickle_fix.py'], - install_requires=['numpy', - 'scipy', - 'scikit-learn', - 'DendroPy', - 'pandas', - 'matplotlib', - 'hdbscan'], test_suite="test", ) diff --git a/environment.yml b/environment.yml index 527303c9..35168020 100644 --- a/environment.yml +++ b/environment.yml @@ -7,7 +7,6 @@ channels: dependencies: - pip - numpy - - mkl - scipy - python-dateutil - pandas @@ -21,6 +20,6 @@ dependencies: - pp-sketchlib >=1.5.1 - graph-tool - requests - - flask + - flask - flask-cors - networkx