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Append distance based QC fails to qcreport #233
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Would it be possible to give it a go with v2.5.0 of PopPUNK? We re-did the QC command: https://poppunk.readthedocs.io/en/latest/qc.html If that's not doing what you want, let us know and we'll add this! |
Thanks John Sorry I'm just running into an error now when I've upgraded to v2.5.0. Seems to be from HDBScan, not sure if this is related to issue #213. Error message
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Conda list
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Thanks Nick That now works, the updated QC output is good too. |
Hi guys
More of a feature request. Would it be possible to append isolate ids that fail QC based on
max-pi-dist
andmax-a-dist
to the outputqcreport.txt
file with other isolates that fail length and Ns QC? Currently, the ids for these distance-based outliers are just printed to the screen after distance calculation in--create-db
mode.That's for me running:
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