diff --git a/PopPUNK/info.py b/PopPUNK/info.py index 449b4c68..8a084d87 100644 --- a/PopPUNK/info.py +++ b/PopPUNK/info.py @@ -108,6 +108,10 @@ def main(): codon_phased = False print("Codon phased seeds:\t\t" + str(codon_phased)) + if 'use_rc' in ref_db.keys(): + use_rc = ref_db['sketches'].attrs['use_rc'] == 1 + print("Uses canonical k-mers:\t" + str(use_rc)) + # Stop if requested if args.simple: sys.exit(0)