From 1b1d30af6a1b7cc5fb6da496ea63226f94f9d91b Mon Sep 17 00:00:00 2001 From: John Lees Date: Sun, 31 Jan 2021 14:30:02 +0000 Subject: [PATCH] Add new scores to tests --- test/run_test.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/test/run_test.py b/test/run_test.py index c488a5ce..c3f11051 100755 --- a/test/run_test.py +++ b/test/run_test.py @@ -31,6 +31,8 @@ sys.stderr.write("Running model refinement (--fit-model refine)\n") subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite", shell=True, check=True) subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite --indiv-refine both", shell=True, check=True) +subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite --score-idx 1", shell=True, check=True) +subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite --score-idx 2", shell=True, check=True) subprocess.run("python ../poppunk-runner.py --fit-model threshold --threshold 0.003 --ref-db example_db --output example_threshold", shell=True, check=True) # lineage clustering