setup.py

from distutils.core import setup

# Keeping all Python code for package in lib directory
NAME = 'cplate'
VERSION = '0.1'
AUTHOR = 'Alexander W Blocker'
AUTHOR_EMAIL = 'ablocker@gmail.com'
URL = 'https://www.github.com/awblocker/cplate'
DESCRIPTION = 'Probabilistic deconvolution for chromatin-structure estimation.'

REQUIRES = ['numpy(>=1.6)','scipy(>=0.9)', 'yaml', 'mpi4py']

PACKAGE_DIR = {'': 'lib'}
PACKAGES = ['cplate']
SCRIPTS = ('deconvolve_em', 'deconvolve_mcmc', 'detect_em', 'detect_mcmc',
           'summarise_mcmc', 'summarise_clusters_mcmc', 'summarise_params_mcmc',
           'estimate_template', 'estimate_digestion_dist', 'segment_genome',
           'simulate_null', 'betas_to_bed.py', 'clusters_to_bed.py',
           'detections_to_bed.py')
SCRIPTS = ['scripts/cplate_' + script for script in SCRIPTS]

setup(name=NAME,
      url=URL,
      version=VERSION,
      description=DESCRIPTION,
      author=AUTHOR,
      author_email=AUTHOR_EMAIL,
      packages=PACKAGES,
      package_dir=PACKAGE_DIR,
      scripts=SCRIPTS,
      requires=REQUIRES
     )