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"5d6aa477eca05abe2412924ca9b9121bc5aab3746cbc4ba4d73e9a3bb44d2f15" diff --git a/pyproject.toml b/pyproject.toml index a44dc5d..c4ffd14 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "semantic-chunkers" -version = "0.0.6" +version = "0.0.7" description = "Super advanced chunking methods for AI" authors = ["Aurelio AI "] readme = "README.md" @@ -16,7 +16,7 @@ regex = "^2023.12.25" tiktoken = ">=0.7.0,<1.0.0" matplotlib = { version = "^3.8.3", optional = true} requests-mock = "^1.12.1" -semantic-router = ">=0.0.20,<0.1.0" +semantic-router = ">=0.0.48,<0.1.0" [tool.poetry.extras] stats = ["matplotlib"] @@ -28,6 +28,7 @@ pytest = "^7.4.3" pytest-mock = "^3.12.0" pytest-cov = "^4.1.0" pytest-xdist = "^3.5.0" +pytest-asyncio = "^0.23.7" mypy = "^1.7.1" types-pyyaml = "^6.0.12.12" types-requests = "^2.31.0" diff --git a/semantic_chunkers/chunkers/base.py b/semantic_chunkers/chunkers/base.py index 4351e57..2e55e5c 100644 --- a/semantic_chunkers/chunkers/base.py +++ b/semantic_chunkers/chunkers/base.py @@ -2,8 +2,8 @@ from colorama import Fore, Style from pydantic.v1 import BaseModel, Extra - from semantic_router.encoders.base import BaseEncoder + from semantic_chunkers.schema import Chunk from semantic_chunkers.splitters.base import BaseSplitter diff --git a/semantic_chunkers/chunkers/consecutive.py b/semantic_chunkers/chunkers/consecutive.py index 1b5664f..c8c8541 100644 --- a/semantic_chunkers/chunkers/consecutive.py +++ b/semantic_chunkers/chunkers/consecutive.py @@ -1,11 +1,11 @@ from typing import Any, List -from tqdm.auto import tqdm import numpy as np - from semantic_router.encoders.base import BaseEncoder -from semantic_chunkers.schema import Chunk +from tqdm.auto import tqdm + from semantic_chunkers.chunkers.base import BaseChunker +from semantic_chunkers.schema import Chunk from semantic_chunkers.splitters.base import BaseSplitter from semantic_chunkers.splitters.sentence import RegexSplitter @@ -58,6 +58,40 @@ def _chunk(self, splits: List[Any], batch_size: int = 64) -> List[Chunk]: self.chunks = chunks return chunks + async def _async_chunk( + self, splits: List[Any], batch_size: int = 64 + ) -> List[Chunk]: + """Merge splits into chunks using semantic similarity. + + :param splits: splits to be merged into chunks. + + :return: list of chunks. + """ + split_embeds = [] + num_splits = len(splits) + for i in tqdm(range(0, num_splits, batch_size)): + split_embeds.extend(await self.encoder.acall(splits[i : i + batch_size])) + norm_embeds = split_embeds / np.linalg.norm(split_embeds, axis=1, keepdims=True) + sim_matrix = np.matmul(norm_embeds, norm_embeds.T) + chunks = [] + curr_split_start_idx = 0 + + for idx in tqdm(range(1, norm_embeds.shape[0])): + curr_sim_score = sim_matrix[idx - 1][idx] + if idx < len(sim_matrix) and curr_sim_score < self.score_threshold: + chunks.append( + Chunk( + splits=splits[curr_split_start_idx:idx], + is_triggered=True, + triggered_score=curr_sim_score, + ) + ) + curr_split_start_idx = idx + # append final chunk + chunks.append(Chunk(splits=splits[curr_split_start_idx:])) + self.chunks = chunks + return chunks + def __call__(self, docs: List[Any]) -> List[List[Chunk]]: """Split documents into smaller chunks based on semantic similarity. @@ -76,3 +110,15 @@ def __call__(self, docs: List[Any]) -> List[List[Chunk]]: doc_chunks = self._chunk(splits) all_chunks.append(doc_chunks) return all_chunks + + async def acall(self, docs: List[Any]) -> List[List[Chunk]]: + all_chunks = [] + for doc in docs: + # split the document into sentences (if needed) + if isinstance(doc, str): + splits = self._split(doc) + else: + splits = doc + doc_chunks = await self._async_chunk(splits) + all_chunks.append(doc_chunks) + return all_chunks diff --git a/semantic_chunkers/chunkers/cumulative.py b/semantic_chunkers/chunkers/cumulative.py index 973952e..b538b14 100644 --- a/semantic_chunkers/chunkers/cumulative.py +++ b/semantic_chunkers/chunkers/cumulative.py @@ -1,11 +1,11 @@ from typing import Any, List -from tqdm.auto import tqdm import numpy as np - from semantic_router.encoders import BaseEncoder -from semantic_chunkers.schema import Chunk +from tqdm.auto import tqdm + from semantic_chunkers.chunkers.base import BaseChunker +from semantic_chunkers.schema import Chunk from semantic_chunkers.splitters.base import BaseSplitter from semantic_chunkers.splitters.sentence import RegexSplitter @@ -76,6 +76,62 @@ def _chunk(self, splits: List[Any], batch_size: int = 64) -> List[Chunk]: return chunks + async def _async_chunk( + self, splits: List[Any], batch_size: int = 64 + ) -> List[Chunk]: + """Merge splits into chunks using semantic similarity. + + :param splits: splits to be merged into chunks. + + :return: list of chunks. + """ + chunks = [] + curr_chunk_start_idx = 0 + num_splits = len(splits) + + for idx in tqdm(range(num_splits)): + if idx + 1 < num_splits: # Ensure there is a next document to compare with. + if idx == 0: + # On the first iteration, compare the + # first document directly to the second. + curr_chunk_docs = splits[idx] + else: + # For subsequent iterations, compare cumulative + # documents up to the current one with the next. + curr_chunk_docs = "\n".join(splits[curr_chunk_start_idx : idx + 1]) + next_doc = splits[idx + 1] + + # Embedding and similarity calculation remains the same. + curr_chunk_docs_embed_result = await self.encoder.acall( + [curr_chunk_docs] + ) + next_doc_embed_result = await self.encoder.acall([next_doc]) + curr_chunk_docs_embed = curr_chunk_docs_embed_result[0] + next_doc_embed = next_doc_embed_result[0] + + curr_sim_score = np.dot(curr_chunk_docs_embed, next_doc_embed) / ( + np.linalg.norm(curr_chunk_docs_embed) + * np.linalg.norm(next_doc_embed) + ) + # Decision to chunk based on similarity score. + if curr_sim_score < self.score_threshold: + chunks.append( + Chunk( + splits=list(splits[curr_chunk_start_idx : idx + 1]), + is_triggered=True, + triggered_score=curr_sim_score, + ) + ) + curr_chunk_start_idx = ( + idx + 1 + ) # Update the start index for the next segment. + + # Add the last segment after the loop. + if curr_chunk_start_idx < num_splits: + chunks.append(Chunk(splits=list(splits[curr_chunk_start_idx:]))) + + return chunks + def __call__(self, docs: List[str]) -> List[List[Chunk]]: """Split documents into smaller chunks based on semantic similarity. @@ -94,3 +150,22 @@ def __call__(self, docs: List[str]) -> List[List[Chunk]]: doc_chunks = self._chunk(splits) all_chunks.append(doc_chunks) return all_chunks + + async def acall(self, docs: List[str]) -> List[List[Chunk]]: + """Split documents into smaller chunks based on semantic similarity. + + :param docs: list of text documents to be chunk, if only wanted to + chunk a single document, pass it as a list with a single element. + + :return: list of list objects containing the chunks. + """ + all_chunks = [] + for doc in docs: + # split the document into sentences (if needed) + if isinstance(doc, str): + splits = self._split(doc) + else: + splits = doc + doc_chunks = await self._async_chunk(splits) + all_chunks.append(doc_chunks) + return all_chunks diff --git a/semantic_chunkers/chunkers/statistical.py b/semantic_chunkers/chunkers/statistical.py index a234a24..97e5629 100644 --- a/semantic_chunkers/chunkers/statistical.py +++ b/semantic_chunkers/chunkers/statistical.py @@ -2,16 +2,15 @@ from typing import Any, List import numpy as np - from semantic_router.encoders.base import BaseEncoder -from semantic_chunkers.schema import Chunk +from tqdm.auto import tqdm + from semantic_chunkers.chunkers.base import BaseChunker +from semantic_chunkers.schema import Chunk from semantic_chunkers.splitters.base import BaseSplitter from semantic_chunkers.splitters.sentence import RegexSplitter -from semantic_chunkers.utils.text import tiktoken_length from semantic_chunkers.utils.logger import logger - -from tqdm.auto import tqdm +from semantic_chunkers.utils.text import tiktoken_length @dataclass @@ -66,15 +65,18 @@ def __init__( self.split_tokens_tolerance = split_tokens_tolerance self.enable_statistics = enable_statistics self.statistics: ChunkStatistics + self.DEFAULT_THRESHOLD = 0.5 def _chunk( self, splits: List[Any], batch_size: int = 64, enforce_max_tokens: bool = False ) -> List[Chunk]: - """Merge splits into chunks using semantic similarity, with optional enforcement of maximum token limits per chunk. + """Merge splits into chunks using semantic similarity, with optional enforcement + of maximum token limits per chunk. :param splits: Splits to be merged into chunks. :param batch_size: Number of splits to process in one batch. - :param enforce_max_tokens: If True, further split chunks that exceed the maximum token limit. + :param enforce_max_tokens: If True, further split chunks that exceed the maximum + token limit. :return: List of chunks. """ @@ -108,7 +110,81 @@ def _chunk( if self.dynamic_threshold: self._find_optimal_threshold(batch_splits, similarities) else: - self.calculated_threshold = self.encoder.score_threshold + self.calculated_threshold = ( + self.encoder.score_threshold + if self.encoder.score_threshold + else self.DEFAULT_THRESHOLD + ) + split_indices = self._find_split_indices(similarities=similarities) + doc_chunks = self._split_documents( + batch_splits, split_indices, similarities + ) + + if len(doc_chunks) > 1: + chunks.extend(doc_chunks[:-1]) + last_split = doc_chunks[-1] + else: + last_split = doc_chunks[0] + + if self.plot_chunks: + self.plot_similarity_scores(similarities, split_indices, doc_chunks) + + if self.enable_statistics: + print(self.statistics) + + if last_split: + chunks.append(last_split) + + return chunks + + async def _async_chunk( + self, splits: List[Any], batch_size: int = 64, enforce_max_tokens: bool = False + ) -> List[Chunk]: + """Merge splits into chunks using semantic similarity, with optional enforcement + of maximum token limits per chunk. + + :param splits: Splits to be merged into chunks. + :param batch_size: Number of splits to process in one batch. + :param enforce_max_tokens: If True, further split chunks that exceed the maximum + token limit. + + :return: List of chunks. + """ + # Split the docs that already exceed max_split_tokens to smaller chunks + if enforce_max_tokens: + new_splits = [] + for split in splits: + token_count = tiktoken_length(split) + if token_count > self.max_split_tokens: + logger.info( + f"Single document exceeds the maximum token limit " + f"of {self.max_split_tokens}. " + "Splitting to sentences before semantically merging." + ) + _splits = self._split(split) + new_splits.extend(_splits) + else: + new_splits.append(split) + + splits = [split for split in new_splits if split and split.strip()] + + chunks = [] + last_split = None + for i in tqdm(range(0, len(splits), batch_size)): + batch_splits = splits[i : i + batch_size] + if last_split is not None: + batch_splits = last_split.splits + batch_splits + + encoded_splits = await self._async_encode_documents(batch_splits) + similarities = self._calculate_similarity_scores(encoded_splits) + if self.dynamic_threshold: + self._find_optimal_threshold(batch_splits, similarities) + else: + self.calculated_threshold = ( + self.encoder.score_threshold + if self.encoder.score_threshold + else self.DEFAULT_THRESHOLD + ) split_indices = self._find_split_indices(similarities=similarities) doc_chunks = self._split_documents( batch_splits, split_indices, similarities @@ -159,11 +235,39 @@ def __call__(self, docs: List[str], batch_size: int = 64) -> List[List[Chunk]]: raise ValueError("The document must be a string.") return all_chunks + async def acall(self, docs: List[str], batch_size: int = 64) -> List[List[Chunk]]: + """Split documents into smaller chunks based on semantic similarity. + + :param docs: list of text documents to be split, if only wanted to + split a single document, pass it as a list with a single element. + + :return: list of Chunk objects containing the split documents. + """ + if not docs: + raise ValueError("At least one document is required for splitting.") + + all_chunks = [] + for doc in docs: + token_count = tiktoken_length(doc) + if token_count > self.max_split_tokens: + logger.info( + f"Single document exceeds the maximum token limit " + f"of {self.max_split_tokens}. " + "Splitting to sentences before semantically merging." + ) + if isinstance(doc, str): + splits = self._split(doc) + doc_chunks = await self._async_chunk(splits, batch_size=batch_size) + all_chunks.append(doc_chunks) + else: + raise ValueError("The document must be a string.") + return all_chunks + def _encode_documents(self, docs: List[str]) -> np.ndarray: """ - Encodes a list of documents into embeddings. If the number of documents exceeds 2000, - the documents are split into batches to avoid overloading the encoder. OpenAI has a - limit of len(array) < 2048. + Encodes a list of documents into embeddings. If the number of documents + exceeds 2000, the documents are split into batches to avoid overloading + the encoder. OpenAI has a limit of len(array) < 2048. :param docs: List of text documents to be encoded. :return: A numpy array of embeddings for the given documents. @@ -182,6 +286,29 @@ def _encode_documents(self, docs: List[str]) -> np.ndarray: return np.array(embeddings) + async def _async_encode_documents(self, docs: List[str]) -> np.ndarray: + """ + Encodes a list of documents into embeddings. If the number of documents + exceeds 2000, the documents are split into batches to avoid overloading + the encoder. OpenAI has a limit of len(array) < 2048. + + :param docs: List of text documents to be encoded. + :return: A numpy array of embeddings for the given documents. + """ + max_docs_per_batch = 2000 + embeddings = [] + + for i in range(0, len(docs), max_docs_per_batch): + batch_docs = docs[i : i + max_docs_per_batch] + try: + batch_embeddings = await self.encoder.acall(batch_docs) + embeddings.extend(batch_embeddings) + except Exception as e: + logger.error(f"Error encoding documents {batch_docs}: {e}") + raise + + return np.array(embeddings) + def _calculate_similarity_scores(self, encoded_docs: np.ndarray) -> List[float]: raw_similarities = [] for idx in range(1, len(encoded_docs)): diff --git a/semantic_chunkers/splitters/__init__.py b/semantic_chunkers/splitters/__init__.py index c6d858a..5b3d258 100644 --- a/semantic_chunkers/splitters/__init__.py +++ b/semantic_chunkers/splitters/__init__.py @@ -1,7 +1,6 @@ from semantic_chunkers.splitters.base import BaseSplitter from semantic_chunkers.splitters.sentence import RegexSplitter - __all__ = [ "BaseSplitter", "RegexSplitter", diff --git a/semantic_chunkers/splitters/sentence.py b/semantic_chunkers/splitters/sentence.py index cd8b2b3..667cc91 100644 --- a/semantic_chunkers/splitters/sentence.py +++ b/semantic_chunkers/splitters/sentence.py @@ -1,6 +1,7 @@ -import regex from typing import List +import regex + from semantic_chunkers.splitters.base import BaseSplitter diff --git a/tests/unit/test_splitters.py b/tests/unit/test_splitters.py index b37e891..8ef8139 100644 --- a/tests/unit/test_splitters.py +++ b/tests/unit/test_splitters.py @@ -1,14 +1,17 @@ -from unittest.mock import Mock, create_autospec +from unittest.mock import AsyncMock, Mock, create_autospec import numpy as np import pytest - from semantic_router.encoders.base import BaseEncoder from semantic_router.encoders.cohere import CohereEncoder -from semantic_chunkers import BaseChunker -from semantic_chunkers import BaseSplitter -from semantic_chunkers import ConsecutiveChunker -from semantic_chunkers import CumulativeChunker + +from semantic_chunkers import ( + BaseChunker, + BaseSplitter, + ConsecutiveChunker, + CumulativeChunker, + StatisticalChunker, +) def test_consecutive_sim_splitter(): @@ -41,6 +44,41 @@ def test_consecutive_sim_splitter(): ], "Second split does not match expected documents" +@pytest.mark.asyncio +async def test_async_consecutive_sim_splitter(): + # Create a Mock object for the encoder + mock_encoder = AsyncMock() + + async def async_return(*args, **kwargs): + return np.array([[1, 0], [1, 0.1], [0, 1]]) + + mock_encoder.acall.side_effect = async_return + + cohere_encoder = CohereEncoder( + name="", + cohere_api_key="a", + ) + # Instantiate the ConsecutiveSimSplitter with the mock encoder + splitter = ConsecutiveChunker(encoder=cohere_encoder, score_threshold=0.9) + splitter.encoder = mock_encoder + + # Define some documents + docs = ["doc1 about something", "doc2 about something", "doc3 about something"] + + # Use the splitter to split the documents + splits = await splitter.acall(docs) + + # Verify the splits + print(splits) + assert len(splits) == 3, "Expected three sets of chunks" + assert splits[0][0].splits == [ + "doc1 about something" + ], "First split does not match expected documents" + assert splits[2][0].splits == [ + "doc3 about something" + ], "Second split does not match expected documents" + + def test_cumulative_sim_splitter(): # Mock the BaseEncoder mock_encoder = Mock() @@ -76,6 +114,42 @@ def test_cumulative_sim_splitter(): assert len(splits) == 5, f"{len(splits)}" +@pytest.mark.asyncio +async def test_async_cumulative_sim_splitter(): + # Mock the BaseEncoder + mock_encoder = AsyncMock() + # Adjust the side_effect to simulate the encoder's behavior for cumulative document comparisons + # This simplistic simulation assumes binary embeddings for demonstration purposes + # Define a side_effect function for the mock encoder + mock_encoder.side_effect = lambda x: ( + [[0.5, 0]] if "doc1" in x or "doc1\ndoc2" in x or "doc2" in x else [[0, 0.5]] + ) + + # Instantiate the CumulativeSimSplitter with the mock encoder + cohere_encoder = CohereEncoder( + name="", + cohere_api_key="a", + ) + splitter = CumulativeChunker(encoder=cohere_encoder, score_threshold=0.9) + splitter.encoder = mock_encoder + + # Define some documents + docs = [ + "doc1 about something", + "doc2 about something", + "doc3 about something", + "doc4 about something", + "doc5 about something", + ] + + # Use the splitter to split the documents + splits = await splitter.acall(docs) + + # Verify the splits + # The expected outcome needs to match the logic defined in your mock_encoder's side_effect + assert len(splits) == 5, f"{len(splits)}" + + def test_consecutive_similarity_splitter_single_doc(): mock_encoder = create_autospec(BaseEncoder) # Assuming any return value since it should not reach the point of using the encoder @@ -101,6 +175,67 @@ def test_cumulative_similarity_splitter_single_doc(): assert len(chunks) == 1 +def test_statistical_chunker(): + # Create a Mock object for the encoder + mock_encoder = Mock() + mock_encoder.side_effect = lambda docs: np.array([[1, 0] for _ in docs]) + + cohere_encoder = CohereEncoder( + name="", + cohere_api_key="a", + ) + # Instantiate the ConsecutiveSimSplitter with the mock encoder + splitter = StatisticalChunker(encoder=cohere_encoder) + splitter.encoder = mock_encoder + + # Define some documents + docs = ["doc1 about something", "doc2 about something", "doc3 about something"] + + # Use the splitter to split the documents + splits = splitter(docs=docs) + + # Verify the splits + print(splits) + assert len(splits) == 3, "Expected three sets of chunks" + assert splits[0][0].splits == [ + "doc1 about something" + ], "First split does not match expected documents" + assert splits[2][0].splits == [ + "doc3 about something" + ], "Second split does not match expected documents" + + +@pytest.mark.asyncio +async def test_async_statistical_chunker(): + # Create a Mock object for the encoder + mock_encoder = AsyncMock() + mock_encoder.side_effect = lambda docs: np.array([[1, 0] for _ in docs]) + + cohere_encoder = CohereEncoder( + name="", + cohere_api_key="a", + ) + # Instantiate the ConsecutiveSimSplitter with the mock encoder + splitter = StatisticalChunker(encoder=cohere_encoder) + splitter.encoder = mock_encoder + + # Define some documents + docs = ["doc1 about something", "doc2 about something", "doc3 about something"] + + # Use the splitter to split the documents + splits = await splitter.acall(docs=docs) + + # Verify the splits + print(splits) + assert len(splits) == 3, "Expected three sets of chunks" + assert splits[0][0].splits == [ + "doc1 about something" + ], "First split does not match expected documents" + assert splits[2][0].splits == [ + "doc3 about something" + ], "Second split does not match expected documents" + + @pytest.fixture def base_splitter_instance(): # Now MockEncoder includes default values for required fields @@ -112,7 +247,6 @@ def base_splitter_instance(): name="test_splitter", encoder=mock_encoder, splitter=mock_splitter, - score_threshold=0.5, )