DESCRIPTION

Package: AneuFinder
Type: Package
Title: Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Version: 1.27.1
Author: Aaron Taudt, Bjorn Bakker, David Porubsky
Maintainer: Aaron Taudt <aaron.taudt@gmail.com>
Description: AneuFinder implements functions for copy-number detection,
    breakpoint detection, and karyotype and heterogeneity analysis in
    single-cell whole genome sequencing and strand-seq data.
Depends:
    R (>= 3.5),
    GenomicRanges,
    ggplot2,
    cowplot,
    AneuFinderData
Imports:
    methods,
    utils,
    grDevices,
    graphics,
    stats,
    foreach,
    doParallel,
    BiocGenerics (>= 0.31.6),
    S4Vectors,
    GenomeInfoDb,
    IRanges,
    Rsamtools,
    bamsignals,
    DNAcopy,
    ecp,
    Biostrings,
    GenomicAlignments,
    reshape2,
    ggdendro,
    ggrepel,
    mclust
Suggests:
    knitr,
    BiocStyle,
    testthat,
    BSgenome.Hsapiens.UCSC.hg19,
    BSgenome.Mmusculus.UCSC.mm10
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2016-05-27 13:29:00 CET+1; Taudt
biocViews: ImmunoOncology, Software, Sequencing, SingleCell, CopyNumberVariation, GenomicVariation, HiddenMarkovModel,
    WholeGenome
URL: https://github.com/ataudt/aneufinder.git
RoxygenNote: 6.0.1