-
Notifications
You must be signed in to change notification settings - Fork 0
/
ExportResultsDataSets.m
89 lines (66 loc) · 4.66 KB
/
ExportResultsDataSets.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
HOME = getenv('HOME');
txtfilePath = fullfile(HOME,'Input','Galit_Lahav','Jose3','M20150416_IR00GY_tracking','M20150416_IR00GY_s101_tracking.txt') ;
data_path = fullfile('D:','DataFromJose','M20150416_p21_20X');
extention = '*.TIF';
exprCFP = 'M20150416_w2CFP_s101_t(\d+).TIF';
exprYFP = 'M20150416_w1YFP_s101_t(\d+).TIF';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_CheckPoints','Results'); Name = 's101-Original'%ORIGINAL
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June6_CheckPoints','Results'); %GMMG
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_May31_Mitosis_CheckPoints','Results'); %MITOSIS
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June10_CheckPoints','Results'); Name = 's101';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June14_Mitosis_CheckPoints','Results'); Name = 's101-Mitodix';
resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June14_CheckPoints','Results'); Name = 's101';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June17_CheckPoints','Results'); Name = 's101_Only Geodesic';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June18_CheckPoints','Results'); Name = 's101_TPT';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June25_CheckPoints','Results'); Name = 's101 - Regularized';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_June27_2_CheckPoints','Results'); Name = 's101 - Regularized';
resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s101_July9_CheckPoints','Results'); Name = 's101 - Regularized';
resExt = '*.TIF';
resExp = 'Seg_M20150416_w2CFP_s101_t(\d+).TIF';
ExportResults(data_path,extention,exprCFP,exprYFP,resPath,resExt,resExp)
%% S102
txtfilePath = fullfile(HOME,'Input','Galit_Lahav','Jose3','M20150416_IR00GY_tracking','M20150416_IR00GY_s102_tracking.txt') ;
%D:\DataFromJose\M20150416_p21_20X
data_path = fullfile('D:','DataFromJose','M20150416_p21_20X');
extention = '*.TIF';
exprCFP = 'M20150416_w2CFP_s102_t(\d+).TIF';
exprYFP = 'M20150416_w1YFP_s102_t(\d+).TIF';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s102_June10_CheckPoints','Results');
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s102_June14_Mitosis_CheckPoints','Results'); Name = 's102-Mitodix';
resPath = fullfile('C:\Users\arbellea\Google Drive BGU\Cell_Tracking','Outputs','Results_LahavLab-Jose3_20X_s102_June14_CheckPoints','Results'); Name = 's102';
%resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s102_June17_CheckPoints','Results'); Name = 's102-Geo Only';
resExt = '*.TIF';
resExp = 'Seg_M20150416_w2CFP_s102_t(\d+).TIF';
ExportResults(data_path,extention,exprCFP,exprYFP,resPath,resExt,resExp)
%% s103
txtfilePath = fullfile(HOME,'Input','Galit_Lahav','Jose3','M20150416_IR00GY_tracking','M20150416_IR00GY_s103_tracking.txt') ;
data_path = fullfile('D:','DataFromJose','M20150416_p21_20X');
extention = '*.TIF';
exprCFP = 'M20150416_w2CFP_s103_t(\d+).TIF';
exprYFP = 'M20150416_w1YFP_s103_t(\d+).TIF';
%resPath = fullfile('.','Outputs','Results_LahavLab-Jose3_20X_s103_June14_Mitosis_CheckPoints','Results'); Name = 's103 - Mitodix';
resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s103_June14_CheckPoints','Results'); Name = 's103';
resExt = '*.TIF';
resExp = 'Seg_M20150416_w2CFP_s103_t(\d+).TIF';
ExportResults(data_path,extention,exprCFP,exprYFP,resPath,resExt,resExp)
%% s104
txtfilePath = fullfile(HOME,'Input','Galit_Lahav','Jose3','M20150416_IR00GY_tracking','M20150416_IR00GY_s104_tracking.txt') ;
data_path = fullfile('D:','DataFromJose','M20150416_p21_20X');
extention = '*.TIF';
exprCFP = 'M20150416_w2CFP_s104_t(\d+).TIF';
exprYFP = 'M20150416_w1YFP_s104_t(\d+).TIF';
%resPath = fullfile('.','Outputs','Results_LahavLab-Jose3_20X_s104_June8_CheckPoints','Results');
resPath = fullfile(HOME,'Outputs','Results_LahavLab-Jose3_20X_s104_June14_CheckPoints','Results'); Name = 's104';
resExt = '*.TIF';
resExp = 'Seg_M20150416_w2CFP_s104_t(\d+).TIF';
ExportResults(data_path,extention,exprCFP,exprYFP,resPath,resExt,resExp)
%% s105
txtfilePath = fullfile(HOME,'Input','Galit_Lahav','Jose3','M20150416_IR00GY_tracking','M20150416_IR00GY_s105_tracking.txt') ;
data_path = fullfile('D:','DataFromJose','M20150416_p21_20X');
extention = '*.TIF';
exprCFP = 'M20150416_w2CFP_s105_t(\d+).TIF';
exprYFP = 'M20150416_w1YFP_s105_t(\d+).TIF';
resPath = fullfile('C:\Users\arbellea\Google Drive BGU\Cell_Tracking\Outputs','Results_LahavLab-Jose3_20X_s105_CheckPoints','Results');
resExt = '*.TIF';
resExp = 'Seg_M20150416_w2CFP_s105_t(\d+).TIF';
ExportResults(data_path,extention,exprCFP,exprYFP,resPath,resExt,resExp)