Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

error at Stage 10: Load Blast Results #43

Open
ggoodstudydaydayup opened this issue Aug 28, 2020 · 2 comments
Open

error at Stage 10: Load Blast Results #43

ggoodstudydaydayup opened this issue Aug 28, 2020 · 2 comments

Comments

@ggoodstudydaydayup
Copy link

Hi,
When I run orthmcl-pipeline at Stage 10: Load Blast Results, it reported the error below.
DBD::mysql::st execute failed: The table 'SimilarSequences' is full at /data/liuyu/Software/orthomcl/bin/orthomclLoadBlast line 39, line 12.
Can you give me some advice?
Thanks in advance.

@apetkau
Copy link
Owner

apetkau commented Aug 28, 2020

Hello @ggoodstudydaydayup, this sounds like an issue with your database. I would check to make sure that the disk has not filled up first of all. If it's not that, you may have to do some troubleshooting on database settings (you may also want to check how much data is in the 'SimilarSequences' table). Here is one page I found that might be useful https://stackoverflow.com/questions/730579/1114-hy000-the-table-is-full

@ggoodstudydaydayup
Copy link
Author

Thanks for your advice. @apetkau

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants