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continueCalling error #84

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dhwani2410 opened this issue Nov 25, 2019 · 0 comments
Open

continueCalling error #84

dhwani2410 opened this issue Nov 25, 2019 · 0 comments

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@dhwani2410
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python bin/Platypus.py continueCalling --vcfFile AllVariants.vcf
2019-11-25 13:15:27,244 - INFO - Platypus will now attempt to finish running a failed process, from the VCF output in file AllVariants.vcf
2019-11-25 13:15:27,244 - INFO - Complete output (old + new) will go to file AllVariants_ContinuedFromFailedProcess.vcf
2019-11-25 13:15:27,245 - INFO - Previous job failed at 6:8564. Job will be re-run from 6:0
Traceback (most recent call last):
File "bin/Platypus.py", line 46, in
possCommandscommand
File "/home/mmlab33/Downloads/Platypus-master/bin/runner.py", line 262, in continueCalling
raise StandardError, "Could not find region which was unfinished in input VCF"
StandardError: Could not find region which was unfinished in input VCF

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