diff --git a/revdep/check.R b/revdep/check.R deleted file mode 100644 index 0952aa26..00000000 --- a/revdep/check.R +++ /dev/null @@ -1,31 +0,0 @@ -# library(devtools) -# install_github("r-lib/revdepcheck") - -# using tools: tried, but seemed to stall, not used -# save mice_x.y.z.tar.gz in dir specified below -#dir <- path.expand("~/Package/mice/checkdep") -#check_packages_in_dir(dir, -# check_args = c("--as-cran", ""), -# reverse = list(repos = getOption("repos")["CRAN"])) - -library(revdepcheck) -revdep_reset() - -# the following takes two hours -revdep_check(pkg = "/Users/buurensv/Dropbox/Package/mice/mice", - num_workers = 10, quiet = FALSE) - -# print out results -revdep_summary() -revdep_details(revdep = "smartdata") - -# commit -system("git add revdep/*.md") -system("git commit -m 'Update revdep results'") -system("git push -u origin HEAD") - -# signal package authors - - -# after successfully submitted to CRAN, clean up -revdep_reset() diff --git a/revdep/failures.md b/revdep/failures.md deleted file mode 100644 index 2b87bec2..00000000 --- a/revdep/failures.md +++ /dev/null @@ -1,139 +0,0 @@ -# brms - -
- -* Version: 2.22.0 -* GitHub: https://github.com/paul-buerkner/brms -* Source code: https://github.com/cran/brms -* Date/Publication: 2024-09-23 13:00:29 UTC -* Number of recursive dependencies: 203 - -Run `revdepcheck::revdep_details(, "brms")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘cmdstanr’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 9.0Mb - sub-directories of 1Mb or more: - R 4.0Mb - doc 3.6Mb - ``` - -# dynr - -
- -* Version: 0.1.16-105 -* GitHub: https://github.com/mhunter1/dynr -* Source code: https://github.com/cran/dynr -* Date/Publication: 2023-11-28 05:20:05 UTC -* Number of recursive dependencies: 147 - -Run `revdepcheck::revdep_details(, "dynr")` for more info - -
- -## In both - -* checking whether package ‘dynr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/buurensv/Dropbox/Package/mice/mice/revdep/checks.noindex/dynr/new/dynr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dynr’ ... -** package ‘dynr’ successfully unpacked and MD5 sums checked -** using staged installation -checking for gsl-config... no -configure: error: gsl-config not found, is GSL installed? -ERROR: configuration failed for package ‘dynr’ -* removing ‘/Users/buurensv/Dropbox/Package/mice/mice/revdep/checks.noindex/dynr/new/dynr.Rcheck/dynr’ - - -``` -### CRAN - -``` -* installing *source* package ‘dynr’ ... -** package ‘dynr’ successfully unpacked and MD5 sums checked -** using staged installation -checking for gsl-config... no -configure: error: gsl-config not found, is GSL installed? -ERROR: configuration failed for package ‘dynr’ -* removing ‘/Users/buurensv/Dropbox/Package/mice/mice/revdep/checks.noindex/dynr/old/dynr.Rcheck/dynr’ - - -``` -# rmsb - -
- -* Version: 1.1-1 -* GitHub: NA -* Source code: https://github.com/cran/rmsb -* Date/Publication: 2024-07-08 11:10:03 UTC -* Number of recursive dependencies: 135 - -Run `revdepcheck::revdep_details(, "rmsb")` for more info - -
- -## In both - -* checking whether package ‘rmsb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/buurensv/Dropbox/Package/mice/mice/revdep/checks.noindex/rmsb/new/rmsb.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘cmdstanr’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/Users/buurensv/Dropbox/Package/mice/mice/revdep/checks.noindex/rmsb/new/rmsb.Rcheck/rmsb’ - - -``` -### CRAN - -``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/Users/buurensv/Dropbox/Package/mice/mice/revdep/checks.noindex/rmsb/old/rmsb.Rcheck/rmsb’ - - -``` diff --git a/revdep/problems.md b/revdep/problems.md deleted file mode 100644 index daf731a6..00000000 --- a/revdep/problems.md +++ /dev/null @@ -1,91 +0,0 @@ -# bipd - -
- -* Version: 0.3 -* GitHub: NA -* Source code: https://github.com/cran/bipd -* Date/Publication: 2022-06-05 16:10:05 UTC -* Number of recursive dependencies: 150 - -Run `revdepcheck::revdep_details(, "bipd")` for more info - -
- -## Newly broken - -* checking dependencies in R code ...sh: line 1: 58727 Segmentation fault: 11 R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo 2>&1 < '/var/folders/5_/g85d42yj50b6lrjq4rzjzg8w0000gn/T//RtmpM38C1S/filee1cf761be8f7' - ``` - NOTE - - *** caught segfault *** - address 0x656d756c6f562f6d, cause 'invalid permissions' - - Traceback: - 1: dyn.load(file, DLLpath = DLLpath, ...) - 2: library.dynam(lib, package, package.lib) - 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 4: asNamespace(ns) - ... - 7: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) - 8: suppressMessages(loadNamespace(p)) - 9: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) - 10: suppressWarnings(suppressMessages(loadNamespace(p))) - 11: doTryCatch(return(expr), name, parentenv, handler) - 12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) - 13: tryCatchList(expr, classes, parentenv, handlers) - 14: tryCatch(suppressWarnings(suppressMessages(loadNamespace(p))), error = function(e) e) - 15: tools:::.check_packages_used(package = "bipd") - An irrecoverable exception occurred. R is aborting now ... - ``` - -## Newly fixed - -* checking dependencies in R code ...sh: line 1: 58721 Segmentation fault: 11 R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo 2>&1 < '/var/folders/5_/g85d42yj50b6lrjq4rzjzg8w0000gn/T//Rtmpxl1LPe/filee1b045bcd2d0' - ``` - NOTE - - *** caught segfault *** - address 0x656d756c6f562f6d, cause 'invalid permissions' - - Traceback: - 1: dyn.load(file, DLLpath = DLLpath, ...) - 2: library.dynam(lib, package, package.lib) - 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 4: asNamespace(ns) - ... - 7: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) - 8: suppressMessages(loadNamespace(p)) - 9: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) - 10: suppressWarnings(suppressMessages(loadNamespace(p))) - 11: doTryCatch(return(expr), name, parentenv, handler) - 12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) - 13: tryCatchList(expr, classes, parentenv, handlers) - 14: tryCatch(suppressWarnings(suppressMessages(loadNamespace(p))), error = function(e) e) - 15: tools:::.check_packages_used(package = "bipd") - An irrecoverable exception occurred. R is aborting now ... - ``` - -## In both - -* checking running R code from vignettes ... - ``` - ‘IPD-meta-analysis-with-missing-data.Rmd’ using ‘UTF-8’... failed - ‘IPD-meta-analysis.Rmd’ using ‘UTF-8’... failed - ‘Imputing-missing-values-in-IPD.Rmd’ using ‘UTF-8’... OK - ERROR - Errors in running code in vignettes: - when running code in ‘IPD-meta-analysis-with-missing-data.Rmd’ - ... - + X <- with(current.data, apply(current.data[, c(" ..." ... [TRUNCATED] - - When sourcing ‘IPD-meta-analysis-with-missing-data.R’: - ... - + n.iter = 5000) - - When sourcing ‘IPD-meta-analysis.R’: - Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object -``` -