Problem loading tablemaker output into R using Ballgown

[henrick-aduda]

Hi, I am trying to load tablemaker output into R using ballgown. I get this error when i run the following code
bg = ballgown(dataDir="/home/henrick/tablemaker/tablemaker-2.1.1.Linux_x86_64/table_maker_output_files/", samplePattern='sample', meas='all')

Error in ballgown(dataDir = "/home/henrick/tablemaker/tablemaker-2.1.1.Linux_x86_64/table_maker_output_files/", :
intron ids were either not the same or not in the same order across samples. double check i_data.ctab for each sample.
In addition: Warning message:
In x$i_id != intronAll[[1]]$i_id :
longer object length is not a multiple of shorter object length

How do i solve this?

[JMF47]

Can you show a snippet of the column and row names for the i_data.ctab object that tablemaker created? What are your sample ids?