DESCRIPTION

Package: ballgown
Maintainer: Jack Fu <jmfu@jhsph.edu>
Authors@R: c(person("Jack", "Fu", role=c("aut"), email="jmfu@jhsph.edu"),
    person(c("Alyssa", "C."), "Frazee", role=c("aut", "cre"),
    email="alyssa.frazee@gmail.com"), person("Leonardo", "Collado-Torres",
    role=c("aut"), email="lcollado@jhu.edu"), person(c("Andrew", "E."),
    "Jaffe", role=c("aut")), person(c("Jeffrey", "T."), "Leek", role=c("aut",
    "ths"), email="jtleek@gmail.com"))
Version: 2.25.1
License: Artistic-2.0
Title: Flexible, isoform-level differential expression analysis
Description: Tools for statistical analysis of assembled transcriptomes,
    including flexible differential expression analysis, visualization of
    transcript structures, and matching of assembled transcripts to annotation.
Depends:
    R (>= 3.1.1),
    methods
Imports:
    GenomicRanges (>= 1.17.25),
    IRanges (>= 1.99.22),
    S4Vectors (>= 0.9.39),
    RColorBrewer,
    splines,
    sva,
    limma,
    rtracklayer (>= 1.29.25),
    Biobase (>= 2.25.0),
    GenomeInfoDb
Suggests:
    testthat,
    knitr,
    markdown
VignetteBuilder: knitr
BugReports: https://github.com/alyssafrazee/ballgown/issues
biocViews: ImmunoOncology, RNASeq, StatisticalMethod, Preprocessing, DifferentialExpression
RoxygenNote: 7.1.1