diff --git a/superset/migrations/versions/989bbe479899_rename_filter_configuration_in_.py b/superset/migrations/versions/989bbe479899_rename_filter_configuration_in_.py
new file mode 100644
index 0000000000000..8330b75aa229e
--- /dev/null
+++ b/superset/migrations/versions/989bbe479899_rename_filter_configuration_in_.py
@@ -0,0 +1,103 @@
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+"""rename_filter_configuration_in_dashboard_metadata.py
+
+Revision ID: 989bbe479899
+Revises: 67da9ef1ef9c
+Create Date: 2021-03-24 09:47:21.569508
+
+"""
+
+# revision identifiers, used by Alembic.
+revision = "989bbe479899"
+down_revision = "67da9ef1ef9c"
+
+import json
+
+from alembic import op
+from sqlalchemy import and_, Column, Integer, Text
+from sqlalchemy.ext.declarative import declarative_base
+
+from superset import db
+
+Base = declarative_base()
+
+
+class Dashboard(Base):
+    """Declarative class to do query in upgrade"""
+
+    __tablename__ = "dashboards"
+    id = Column(Integer, primary_key=True)
+    json_metadata = Column(Text)
+
+
+def upgrade():
+    bind = op.get_bind()
+    session = db.Session(bind=bind)
+
+    dashboards = (
+        session.query(Dashboard)
+        .filter(Dashboard.json_metadata.like('%"filter_configuration"%'))
+        .all()
+    )
+    changes = 0
+    for dashboard in dashboards:
+        try:
+            json_metadata = json.loads(dashboard.json_metadata)
+            filter_configuration = json_metadata.pop("filter_configuration", None)
+            if filter_configuration:
+                changes += 1
+                json_metadata["native_filter_configuration"] = filter_configuration
+                dashboard.json_metadata = json.dumps(json_metadata, sort_keys=True)
+        except Exception as e:
+            print(e)
+            print(f"Parsing json_metadata for dashboard {dashboard.id} failed.")
+            pass
+
+    session.commit()
+    session.close()
+    print(f"Updated {changes} native filter configurations.")
+
+
+def downgrade():
+    bind = op.get_bind()
+    session = db.Session(bind=bind)
+
+    dashboards = (
+        session.query(Dashboard)
+        .filter(Dashboard.json_metadata.like('%"native_filter_configuration"%'))
+        .all()
+    )
+    changes = 0
+    for dashboard in dashboards:
+        try:
+            json_metadata = json.loads(dashboard.json_metadata)
+            native_filter_configuration = json_metadata.pop(
+                "native_filter_configuration", None
+            )
+            if native_filter_configuration:
+                changes += 1
+                json_metadata["filter_configuration"] = native_filter_configuration
+                dashboard.json_metadata = json.dumps(json_metadata, sort_keys=True)
+        except Exception as e:
+            print(e)
+            print(f"Parsing json_metadata for dashboard {dashboard.id} failed.")
+            pass
+
+    session.commit()
+    session.close()
+    print(f"Updated {changes} pie chart labels.")