Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error with rpsblast+ #8

Open
rajaldebnath opened this issue Feb 25, 2018 · 0 comments
Open

Error with rpsblast+ #8

rajaldebnath opened this issue Feb 25, 2018 · 0 comments

Comments

@rajaldebnath
Copy link

rajaldebnath commented Feb 25, 2018

Dear Aleimba,

I tried running the following command with the respective error message.

rpsblast+ -query protein.faa -db ../../COG/cog_LE_db/ -evalue 0.00001 -outfmt "6 qseqid sseqid evalue pident score qstart qend sstart send length slen" -out cog_blast_output.out

BLAST Database error: No alias or index file found for protein database [../../COG/cog_LE_db/] in search path [/home/rajal/Downloads/prokka/prokka_annotation:/var/lib/blastdb::]

I am using rpsblast+ version [Reverse Position Specific BLAST 2.2.28+]. What am I missing here?

Thank you.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant