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cdd2cog and RPSBLAST 2.2.31+ report parse #7

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mberacochea opened this issue Feb 4, 2018 · 0 comments
Open

cdd2cog and RPSBLAST 2.2.31+ report parse #7

mberacochea opened this issue Feb 4, 2018 · 0 comments

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@mberacochea
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Hi,

Thanks for the tool, really useful!.

There seems to be a change on the output of RPS-Blast, an example line:

fig|992418.4.peg.8018 gnl|CDD|223110 26.42 159 100 6 20 165 11 165 4e-13 65.6 45

The subject id format changed, and the current regex on cdd2cog doesn't work. Changing the line 302 to my $pssm_id = $1 if $line[1] =~ /^gnl\|CDD\|(\d+)/; # get PSSM-Id from the subject hit fix the issue.

Regards

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