ignore warnings and leave comment on what needs to be improved

pyproject.toml

@@ -17,4 +17,29 @@ filterwarnings = [
     # E     _warn("subprocess %s is still running" % self.pid,
     # E ResourceWarning: subprocess 382685 is still running
     'ignore:Exception ignored in:pytest.PytestUnraisableExceptionWarning:_pytest',
+    # TODO: This comes from a transitive dependency of optimade_client
+    # Remove this when this issue is addressed:
+    # https://github.com/CasperWA/ipywidgets-extended/issues/85
+    'ignore::DeprecationWarning:ipywidgets_extended',
+    # TODO: StructureManagerWidget pass arguments by kwargs to StructureDataViewer and will be deprecated.
+    # E           DeprecationWarning: Passing unrecognized arguments to super(StructureManagerWidget).__init__(configuration_tabs=['Cell', 'Selection', 'Appearance', 'Download']).
+    # E           object.__init__() takes exactly one argument (the instance to initialize)
+    # E           This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
+    'ignore::DeprecationWarning:ipywidgets',
+    'ignore::DeprecationWarning:ase.atoms',
+    # TODO: bandsplot_widget has an issue in schema validation
+    # >       result._update_view()
+    #
+    # tests/test_plugins_bands.py:12:
+    # _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
+    # src/aiidalab_qe/plugins/bands/result.py:40: in _update_view
+    #     _bands_plot_view = BandsPlotWidget(
+    # ../../.local/lib/python3.9/site-packages/widget_bandsplot/bandsplot.py:112: in __init__
+    #     validate(instance=i, schema=BANDS_SCHEMA)
+    # /opt/conda/lib/python3.9/site-packages/jsonschema/validators.py:928: in validate
+    #     cls = validator_for(schema)
+    'ignore::DeprecationWarning:jsonschema',
+    # TODO: use uuid instead of node object in WorkChainViewer.
+    # Otherwise, the `Instance '<DbNode at 0x7f2f1bd885b0>' is not persistent within this Session` exception is raised.
+    'ignore::pytest.PytestUnhandledThreadExceptionWarning:_pytest',
 ]

src/aiidalab_qe/app/configuration/advanced.py

@@ -39,6 +39,7 @@ class AdvancedSettings(Panel):
 
     # protocol interface
     protocol = tl.Unicode(allow_none=True)
+    # TODO: (unckpz) the DbNode persistence issue will be raised if using AiiDA Node as the trait.
     input_structure = tl.Instance(orm.StructureData, allow_none=True)
     spin_type = tl.Unicode()
     electronic_type = tl.Unicode()

src/aiidalab_qe/app/result/workchain_viewer.py

@@ -111,11 +111,11 @@ def toggle_camera():
             **kwargs,
         )
         self._process_monitor = ProcessMonitor(
-            process=self.node,
             callbacks=[
                 self._update_view,
             ],
         )
+        self._process_monitor.value = self.node.uuid
 
     def _update_view(self):
         with self.hold_trait_notifications():

tests/test_result.py

@@ -76,5 +76,5 @@ def test_summary_view(generate_qeapp_workchain):
         "Initial Magnetic Moments": "",
     }
     for key, value in parameters.items():
-        td = parsed.find("td", text=key).find_next_sibling("td")
+        td = parsed.find("td", string=key).find_next_sibling("td")
         assert td.text == value