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pyproject.toml
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[build-system]
requires = ['setuptools >= 61.0.0']
build-backend = 'setuptools.build_meta'
[project]
name = 'fsqc'
description = 'Quality control scripts for FastSurfer and FreeSurfer structural MRI data'
license = {file = 'LICENSE'}
requires-python = '>=3.8'
authors = [
{name = 'Kersten Diers', email = '[email protected]'},
{name = 'Martin Reuter', email = '[email protected]'}
]
maintainers = [
{name = 'Kersten Diers', email = '[email protected]'},
{name = 'Martin Reuter', email = '[email protected]'}
]
keywords = [
'FastSurfer',
'FreeSurfer',
'Quality control',
'Quality assurance',
]
classifiers = [
'Operating System :: Unix',
'Operating System :: MacOS',
'Programming Language :: Python :: 3 :: Only',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Natural Language :: English',
'License :: OSI Approved :: MIT License',
'Intended Audience :: Science/Research',
]
dynamic = ["version", "readme", "dependencies"]
[project.optional-dependencies]
build = [
'build',
'twine',
]
style = [
'bibclean',
'black',
'codespell',
'isort',
'pydocstyle[toml]',
'ruff',
]
test = [
'pytest',
'pytest-cov',
'pytest-timeout',
]
all = [
'fsqc[build]',
'fsqc[style]',
]
full = [
'fsqc[all]',
]
[project.urls]
homepage = 'https://github.com/Deep-MI/fsqc'
documentation = 'https://github.com/Deep-MI/fsqc'
source = 'https://github.com/Deep-MI/fsqc'
tracker = 'https://github.com/Deep-MI/fsqc/issues'
[project.scripts]
run_fsqc = 'fsqc.cli:main'
[tool.setuptools.dynamic]
version = {file = 'VERSION'}
readme = {file = 'DESCRIPTION.md', content-type = "text/markdown"}
dependencies = {file = 'requirements.txt'}
#[tool.setuptools] ### probably not needed
#include-package-data = false
[tool.setuptools.packages.find]
include = ['fsqc', 'fsqc.cli']
exclude = ['docker', 'singularity']
[tool.black]
line-length = 88
target-version = ['py38']
include = '\.pyi?$'
extend-exclude = '''
(
__pycache__
| \.github
| setup.py
)
'''
[tool.isort]
profile = 'black'
multi_line_output = 3
line_length = 88
py_version = 38
extend_skip_glob = [
'setup.py',
'data/*',
'examples/*',
]
[tool.pydocstyle]
convention = 'numpy'
ignore-decorators = '(copy_doc|property|.*setter|.*getter|pyqtSlot|Slot)'
match = '^(?!setup|__init__|test_).*\.py'
match-dir = '^fsqc.*'
add_ignore = 'D100,D104,D107'
[tool.ruff]
line-length = 88
extend-exclude = [
"doc",
"setup.py",
]
ignore = ["E501"] # line too long (black will do that)
[tool.ruff.per-file-ignores]
"__init__.py" = ["F401"]
[tool.pytest.ini_options]
minversion = '6.0'
filterwarnings = []
addopts = [
"--import-mode=importlib",
"--junit-xml=junit-results.xml",
"--durations=20",
"--verbose",
]
[tool.coverage.run]
branch = true
cover_pylib = false
omit = [
'**/__init__.py',
'**/fsqc/_version.py',
'**/fsqc/commands/*',
'**/tests/**',
]
[tool.coverage.report]
exclude_lines = [
'pragma: no cover',
'if __name__ == .__main__.:',
]
precision = 2