From 23118e27a1dd12d6a766e04a0d1c18838ce39533 Mon Sep 17 00:00:00 2001 From: Adrien Taudiere Date: Tue, 12 Dec 2023 12:49:56 +0100 Subject: [PATCH] bugfix retry R-CMD-check github action --- .github/workflows/R-CMD-check.yaml | 2 +- R/controls.R | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 035c0f25..b7898c6f 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -45,4 +45,4 @@ jobs: - uses: r-lib/actions/check-r-package@v2 with: upload-snapshots: true - args: 'c("--no-tests", "--no-examples", "--no-vignettes", "--no-build-vignettes")' + args: 'c("--no-tests", "--no-examples", "--no-vignettes", "--no-build-vignettes", "--no-manual")' diff --git a/R/controls.R b/R/controls.R index b6262c61..ee037f41 100644 --- a/R/controls.R +++ b/R/controls.R @@ -23,7 +23,7 @@ search_exact_seq_pq <- function(physeq, sequences) { res <- list() for (i in seq_along(sequences)) { original <- sequences[[i]] - rev <- reverse(sequences[[i]]) + rev <- Biostrings::reverse(sequences[[i]]) rev_comp <- Biostrings::reverseComplement(sequences[[i]]) comp <- Biostrings::complement(sequences[[i]])