Updated contact details
- local x86_64-w64-mingw32/x64 (64-bit) install, R 3.6.0
- Ubuntu 16.04.6 LTS (on travis-ci), R 3.6.1
- Windows Server 2012 R2 x64 (build 9600) on (appveyor), R3.6.1
- check_win_release
Further testing of clinicaltrials.gov functions. Update to provide future compatibility with tidyr::complete().
Note that the "Clinica lTrials.gov" is not a spelling error in the DESCRIPTION file as it refers to an website of that name.
Adding new function and underlying xslt to facilitate uploads to ClinicalTrials.gov as well as EudraCT .
an error is created if input fails the check of group names being at least 4 characters in length.
Minor corrections to test code, setting a resetting options(StringsAsFactors).
Modified the simpleToEudraCT.xslt file that conditionally sets the version to be 3 for this SOC, and 22 for all other SOC values. A bug was detected with the version number associated with SOC "Product issues", where the default value of 19 is not accepted by the EudraCT portal.
Typos, punctuation corrected in the DESCRIPTIOn file
- u nits --> units
- event;for --> event; for
- package: prepares --> package prepares
- EudraCT; formats --> EudraCT and formats
Angled brackets removed in the URL field, but a reference with <> is added within the Description field
- In DESCRIPTION the URL is now contained in <> brackets
- capitals have been removed from the description line in DESCRIPTION
- In the vignette the second URL https://eudract.ema.europa.eu/docs/technical/schemas/clinicaltrial/results/adverseEvents.xsd , is retained. Further comment is added to explain it is semi-readible data/code file rather than a webpage.
- message() has replace cat or print in eudract_convert(), simple_safety_xml()
- the on.exit(options()) line has been moved within print.safety_summary() to be immediately after the options() modification.
- The examples, vignette, and testing file have been checked for writing files, and all cases have been modified to use tempdir() or tempfile().
Found the following (possibly) invalid file URIs: URI: medra From: man/soc_code.Rd URI: eutctid From: man/soc_code.Rd Check: for non-standard things in the check directory, Result: NOTE Found the following files/directories: 'simple.xml' 'table_eudract.xml'
There were no ERRORs or WARNINGs.
There is 1 NOTE:
Found the following (possibly) invalid URLs: URL: https://eudract.ema.europa.eu/ From: inst/doc/eudract.html Status: Error Message: libcurl error code 60: server certificate verification failed. CAfile: none CRLfile: none (Status without verification: OK) URL: https://eudract.ema.europa.eu/docs/technical/schemas/clinicaltrial/results/adverseEvents.xsd From: inst/doc/eudract.html Status: Error Message: libcurl error code 60: server certificate verification failed. CAfile: none CRLfile: none (Status without verification: OK)
Both websites are outside of my control but give crucial documentation relevant to this package. The URLs are both in full working order. Hence this is a false positive.
New package so no downstream dependencies.