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QUAST 5.0.1
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@alexeigurevich alexeigurevich released this 22 Oct 16:00
quast_5.0.1
4dab611

Mostly a bugfix release:

  • Fixed bug in using --split-scaffolds with MetaQUAST
  • Fixed bug in parsing genome sequences of GeneMark predicted genes
  • Fixed bug with crash of UpperBound creation when no paired-end reads are provided

Few updates that do not affect QUAST functionality:

  • Improved documentation and error/warning/info messages
  • Trying to use already installed minimap2, Glimmer, joblib, simplejson rather than distributions from the QUAST package (important for external QUAST installers)
  • GeneMark license files are updated

And just two tiny functional changes:

  • Using asm20 minimap2 preset for references with high divergence from the assembled organism (provided --min-identity is below 90%). As before, asm10 is used for --min-identity below 95% and asm5 for 95% and above
  • Now FASTA entry names are considered as a sequence before the first space in the header line (>...). Previously, the entire lines were considered.
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