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setup.py
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#
# This Python module has been developed by V.A. Sole, from the European
# Synchrotron Radiation Facility (ESRF) to build PyMca.
# Given the nature of this work, these module can be considered public domain.
# Therefore redistribution and use in source and binary forms, with or without
# modification, are permitted provided the following disclaimer is accepted:
#
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR(S) AND THE ESRF ``AS IS'' AND ANY
# EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE AUTHOR(S) AND/OR THE ESRF BE LIABLE FOR ANY
# DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
import sys,os
import glob
import platform
import time
USING_SETUPTOOLS = True
if 'bdist_wheel' in sys.argv:
# wheels require setuptools
from setuptools import setup
from setuptools.command.install import install as dftinstall
from setuptools import Command
from setuptools.extension import Extension
from setuptools.command.build_py import build_py
from distutils.command.install_data import install_data
from setuptools.command.install_scripts import install_scripts
elif '--distutils' in sys.argv:
# The cx_setup.py machinery works with distutils
sys.argv.remove("--distutils")
from distutils.core import setup
from distutils.command.install import install as dftinstall
from distutils.core import Command
from distutils.core import Extension
from distutils.command.build_py import build_py
from distutils.command.install_data import install_data
from distutils.command.install_scripts import install_scripts
USING_SETUPTOOLS = False
else:
try:
from setuptools import setup
from setuptools.command.install import install as dftinstall
from setuptools import Command
from setuptools.extension import Extension
from setuptools.command.build_py import build_py
from distutils.command.install_data import install_data
from setuptools.command.install_scripts import install_scripts
except ImportError:
from distutils.core import setup
from distutils.command.install import install as dftinstall
from distutils.core import Command
from distutils.core import Extension
from distutils.command.build_py import build_py
from distutils.command.install_data import install_data
from distutils.command.install_scripts import install_scripts
USING_SETUPTOOLS = False
try:
import numpy
except ImportError:
text = "You must have numpy installed.\n"
text += "See http://sourceforge.net/project/showfiles.php?group_id=1369&package_id=175103\n"
raise ImportError(text)
import distutils.sysconfig
try:
from Cython.Distutils import build_ext
import Cython.Compiler.Version
if Cython.Compiler.Version.version < '0.18':
build_ext = None
except:
build_ext = None
global PYMCA_INSTALL_DIR
global PYMCA_SCRIPTS_DIR
global USE_SMART_INSTALL_SCRIPTS
#package maintainers customization
# Dear (Debian, RedHat, ...) package makers, please feel free to customize the
# following paths to the directory containing module's data relative to the
# directory containing the python modules (aka. installation directory).
# The sift module implements a patented algorithm. The algorithm can be used
# for non-commercial research purposes. If you do not want to distribute it
# with the PyMca sources you just need to delete the PyMca5/PyMcaMath/sift directory.
PYMCA_DATA_DIR = os.getenv("PYMCA_DATA_DIR")
PYMCA_DOC_DIR = os.getenv("PYMCA_DOC_DIR")
if PYMCA_DATA_DIR is None:
PYMCA_DATA_DIR = os.path.join('PyMca5','PyMcaData')
if PYMCA_DOC_DIR is None:
PYMCA_DOC_DIR = os.path.join('PyMca5','PyMcaData')
USE_SMART_INSTALL_SCRIPTS = False
if "--install-scripts" in sys.argv:
USE_SMART_INSTALL_SCRIPTS = True
SPECFILE_USE_GNU_SOURCE = os.getenv("SPECFILE_USE_GNU_SOURCE")
if SPECFILE_USE_GNU_SOURCE is None:
SPECFILE_USE_GNU_SOURCE = 0
if sys.platform.lower().startswith("linux"):
print("WARNING:")
print("A cleaner locale independent implementation")
print("may be achieved setting SPECFILE_USE_GNU_SOURCE to 1")
print("For instance running this script as:")
print("SPECFILE_USE_GNU_SOURCE=1 python setup.py build")
else:
SPECFILE_USE_GNU_SOURCE = int(SPECFILE_USE_GNU_SOURCE)
# check if cython is not to be used despite being present
def use_cython():
"""
Check if cython is disabled from the command line or the environment.
"""
if "WITH_CYTHON" in os.environ:
if os.environ["WITH_CYTHON"] in ["False", "0", 0]:
print("No Cython requested by environment")
return False
if ("--no-cython" in sys.argv):
sys.argv.remove("--no-cython")
os.environ["WITH_CYTHON"] = "False"
print("No Cython requested by command line")
return False
return True
if build_ext is not None:
# we can use cython, but it may have been explicitely disabled
if not use_cython():
build_ext = None
# check if fisx library is to be build
def use_fisx():
"""
Check if fisx is requested from the command line or the environment.
"""
if "WITH_FISX" in os.environ:
if os.environ["WITH_FISX"] in ["True", "1", 1]:
print("Use of fisx library requested by environment")
return True
if ("--fisx" in sys.argv):
sys.argv.remove("--fisx")
os.environ["WITH_FISX"] = "True"
print("Use fisx library requested by command line")
return True
return False
if use_fisx():
# fisx is expected to be an independent library and
# ideally one would use git subtree to put it in third-party
# but one needs git > 1.9.x
fisx_src = os.path.join(os.path.dirname(os.path.abspath(__file__)),
"third-party", "fisx")
if not os.path.exists(fisx_src):
print("fisx library not found but installation requested")
raise IOError("Installation of fisx requested but library not found")
else:
fisx_src = None
ffile = open(os.path.join('PyMca5', '__init__.py'), 'r').readlines()
for line in ffile:
if line.startswith('__version__'):
#remove spaces and split
__version__ = "%s" % line.replace(' ','').split("=")[-1][:-1]
#remove " or ' present
__version__ = __version__[1:-1]
break
# Make sure we work with a clean MANIFEST file
DEBIAN_SRC = False
if "sdist" in sys.argv:
manifestFile = os.path.join(os.path.dirname(os.path.abspath(__file__)),
"MANIFEST")
if os.path.exists(manifestFile):
os.remove(manifestFile)
if "DEBIAN_SRC" in os.environ:
if os.environ["DEBIAN_SRC"] in ["True", "1", 1]:
print("Generating Debian specific source distribution without cython generated files")
print("If you cython version is incompatible, it will be your problem")
DEBIAN_SRC = True
print("PyMca X-Ray Fluorescence Toolkit %s\n" % __version__)
# The following is not supported by python-2.3:
#package_data = {'PyMca': ['attdata/*', 'HTML/*.*', 'HTML/IMAGES/*', 'HTML/PyMCA_files/*']}
packages = ['PyMca5','PyMca5.PyMcaPlugins', 'PyMca5.tests',
'PyMca5.PyMca',
'PyMca5.PyMcaCore',
'PyMca5.PyMcaPhysics',
'PyMca5.PyMcaPhysics.xrf',
'PyMca5.PyMcaPhysics.xrf.XRFMC',
'PyMca5.PyMcaPhysics.xas',
'PyMca5.PyMcaIO',
'PyMca5.PyMcaMisc',
'PyMca5.PyMcaMath',
'PyMca5.PyMcaMath.fitting',
'PyMca5.PyMcaMath.mva',
'PyMca5.PyMcaMath.mva.py_nnma',
'PyMca5.PyMcaGraph','PyMca5.PyMcaGraph.backends',
'PyMca5.PyMcaGui', 'PyMca5.PyMcaGui.plotting',
'PyMca5.PyMcaGui.physics',
'PyMca5.PyMcaGui.physics.xas',
'PyMca5.PyMcaGui.physics.xrf',
'PyMca5.PyMcaGui.pymca',
'PyMca5.PyMcaGui.misc',
'PyMca5.PyMcaGui.io',
'PyMca5.PyMcaGui.io.hdf5',
'PyMca5.PyMcaGui.math',
'PyMca5.PyMcaGui.math.fitting',]
py_modules = []
# Specify all the required PyMca data
data_files = [(PYMCA_DATA_DIR, ['LICENSE',
'LICENSE.GPL',
'LICENSE.LGPL',
'LICENSE.MIT',
'PyMca5/PyMcaData/Scofield1973.dict',
'changelog.txt',
'PyMca5/PyMcaData/McaTheory.cfg',
'PyMca5/PyMcaData/PyMcaSplashImage.png',
'PyMca5/PyMcaData/KShellRatesScofieldHS.dat',
'PyMca5/PyMcaData/LShellRatesCampbell.dat',
'PyMca5/PyMcaData/LShellRatesScofieldHS.dat',
'PyMca5/PyMcaData/EXAFS_Cu.dat',
'PyMca5/PyMcaData/EXAFS_Ge.dat',
'PyMca5/PyMcaData/XRFSpectrum.mca']),
(PYMCA_DATA_DIR+'/attdata', glob.glob('PyMca5/PyMcaData/attdata/*')),
(PYMCA_DOC_DIR+'/HTML', glob.glob('PyMca5/PyMcaData/HTML/*.*')),
(PYMCA_DOC_DIR+'/HTML/IMAGES', glob.glob('PyMca5/PyMcaData/HTML/IMAGES/*')),
(PYMCA_DOC_DIR+'/HTML/PyMCA_files', glob.glob('PyMca5/HTML/PyMCA_files/*'))]
if os.path.exists(os.path.join("PyMca5", "EPDL97")):
packages.append('PyMca5.EPDL97')
data_files.append((PYMCA_DATA_DIR+'/EPDL97',glob.glob('PyMca5/EPDL97/*.DAT')))
data_files.append((PYMCA_DATA_DIR+'/EPDL97',['PyMca5/EPDL97/LICENSE']))
global SIFT_OPENCL_FILES
SIFT_OPENCL_FILES = []
if os.path.exists(os.path.join("PyMca5", "PyMcaMath", "sift")):
packages.append('PyMca5.PyMcaMath.sift')
SIFT_OPENCL_FILES = glob.glob('PyMca5/PyMcaMath/sift/*.cl')
data_files.append((os.path.join('PyMca5', 'PyMcaMath', 'sift'),
SIFT_OPENCL_FILES))
LOCAL_OBJECT3D =False
if os.path.exists(os.path.join("PyMca5", "Object3D")):
LOCAL_OBJECT3D = True
if os.path.exists(os.path.join("PyMca5", "PyMcaGraph", "backends", "GLSupport")):
packages.append('PyMca5.PyMcaGraph.backends.GLSupport')
if os.path.exists(os.path.join("PyMca5", "PyMcaGraph", "backends", "GLSupport", "gl")):
packages.append('PyMca5.PyMcaGraph.backends.GLSupport.gl')
sources = glob.glob('*.c')
if sys.platform == "win32":
define_macros = [('WIN32',None)]
script_files = glob.glob('PyMca5/scripts/*')
script_files += glob.glob('scripts/*.bat')
script_files.append('scripts/pymca_win_post_install.py')
else:
define_macros = []
script_files = glob.glob('PyMca5/scripts/*')
def build_FastEdf(ext_modules):
module = Extension(name = 'PyMca5.FastEdf',
sources = glob.glob('PyMca5/PyMcaIO/edf/*.c'),
define_macros = define_macros,
include_dirs = [numpy.get_include()])
ext_modules.append(module)
def build_specfile(ext_modules):
if os.name.lower().startswith('posix'):
specfile_define_macros = [('PYMCA_POSIX', None)]
#the best choice is to use _GNU_SOURCE if possible
#because that enables the use of strtod_l
if SPECFILE_USE_GNU_SOURCE:
specfile_define_macros = [('_GNU_SOURCE', 1)]
else:
specfile_define_macros = define_macros
srcfiles = [ 'sfheader','sfinit','sflists','sfdata','sfindex',
'sflabel' ,'sfmca', 'sftools','locale_management','specfile_py']
if sys.version >= '3.0':
srcfiles[-1] += '3'
sources = []
specfile_source_dir = os.path.join('PyMca5', 'PyMcaIO', 'specfile', 'src')
specfile_include_dir = os.path.join('PyMca5', 'PyMcaIO', 'specfile', 'include')
for ffile in srcfiles:
sources.append(os.path.join(specfile_source_dir, ffile+'.c'))
module = Extension(name = 'PyMca5.PyMcaIO.specfile',
sources = sources,
define_macros = specfile_define_macros,
include_dirs = [specfile_include_dir,
numpy.get_include()])
ext_modules.append(module)
def build_specfit(ext_modules):
module = Extension(name = 'PyMca5.PyMcaMath.fitting.SpecfitFuns',
sources = glob.glob('PyMca5/PyMcaMath/fitting/specfit/*.c'),
define_macros = define_macros,
include_dirs = ['PyMca5/PyMcaMath/fitting/specfit',
numpy.get_include()])
ext_modules.append(module)
def build_sps(ext_modules):
if platform.system() == 'Linux' :
extra_compile_args = ['-pthread']
#extra_compile_args = []
elif platform.system() == 'SunOS' :
#extra_compile_args = ['-pthreads']
extra_compile_args = []
else:
extra_compile_args = []
module = Extension(name = 'PyMca5.spslut',
sources = ['PyMca5/PyMcaIO/sps/Src/sps_lut.c',
'PyMca5/PyMcaIO/sps/Src/spslut_py.c'],
define_macros = define_macros,
extra_compile_args = extra_compile_args,
include_dirs = ['PyMca5/PyMcaIO/sps/Include',
numpy.get_include()])
ext_modules.append(module)
if sys.platform != "win32":
module = (Extension(name = 'PyMca5.PyMcaIO.sps',
sources = ['PyMca5/PyMcaIO/sps/Src/sps.c',
'PyMca5/PyMcaIO/sps/Src/sps_py.c'],
define_macros = define_macros,
extra_compile_args = extra_compile_args,
include_dirs = ['PyMca5/PyMcaIO/sps/Include',
numpy.get_include()]))
ext_modules.append(module)
def build_PyMcaIOHelper(ext_modules):
module = Extension(name = 'PyMca5.PyMcaIO.PyMcaIOHelper',
sources = glob.glob('PyMca5/PyMcaIO/PyMcaIOHelper/*.c'),
define_macros = define_macros,
include_dirs = ['PyMca5/PyMcaIO/PyMcaIOHelper',
numpy.get_include()])
ext_modules.append(module)
def build_Object3DCTools(ext_modules):
includes = [numpy.get_include()]
if sys.platform == "win32":
libraries = ['opengl32', 'glu32']
# include headers missing in microsoft implementation of OpenGL
includes.append('third-party/khronos_headers')
elif sys.platform == "darwin":
libraries = []
else:
libraries = ['GL', 'GLU']
if sys.platform == 'windows':
WindowsSDK = os.getenv('WindowsSdkDir')
#if WindowsSDK is not None:
# includes.append(WindowsSDK)
module = Extension(name = 'PyMca5.Object3D.Object3DCTools',
sources = glob.glob('PyMca5/Object3D/Object3DCTools/*.c'),
define_macros = define_macros,
libraries = libraries,
include_dirs = includes)
ext_modules.append(module)
def build_Object3DQhull(extensions):
libraries = []
sources = ["PyMca5/Object3D/Object3DQhull/Object3DQhull.c"]
include_dirs = [numpy.get_include()]
# check if the user provide some information about a system qhull
# library
QHULL_CFLAGS = os.getenv("QHULL_CFLAGS")
QHULL_LIBS = os.getenv("QHULL_LIBS")
extra_compile_args = []
extra_link_args = []
if QHULL_CFLAGS and QHULL_LIBS:
extra_compile_args += [QHULL_CFLAGS]
extra_link_args += [QHULL_LIBS]
else:
sources += glob.glob("third-party/qhull/src/*.c")
include_dirs += ["third-party/qhull/src"]
module = Extension(name='PyMca5.Object3D.Object3DQhull',
sources=sources,
define_macros=define_macros,
libraries=libraries,
include_dirs=include_dirs,
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args)
extensions.append(module)
def build_PyMcaSciPy(ext_modules):
packages.append('PyMca5.PyMcaMath.PyMcaSciPy')
packages.append('PyMca5.PyMcaMath.PyMcaSciPy.signal')
module = Extension(name = 'PyMca5.PyMcaMath.PyMcaSciPy.signal.mediantools',
sources = glob.glob('PyMca5/PyMcaMath/PyMcaSciPy/signal/*.c'),
define_macros = [],
include_dirs = [numpy.get_include()])
ext_modules.append(module)
def build_plotting_ctools(ext_modules):
packages.append('PyMca5.PyMcaGraph.ctools')
basedir = os.path.join('PyMca5', 'PyMcaGraph','ctools', '_ctools')
c_files = [os.path.join(basedir, 'src', 'InsidePolygonWithBounds.c'),
os.path.join(basedir, 'src', 'MinMaxImpl.c'),
os.path.join(basedir, 'src', 'Colormap.c')]
if build_ext:
src = [os.path.join(basedir, 'cython','_ctools.pyx')]
else:
src = []
for fname in glob.glob(os.path.join(basedir, 'cython','*.c')):
src.append(os.path.join(basedir, 'cython', os.path.basename(fname)))
src += c_files
if sys.platform == 'win32':
extra_compile_args = []
extra_link_args = []
else:
extra_compile_args = []
extra_link_args = []
module = Extension(name="PyMca5.PyMcaGraph.ctools._ctools",
sources=src,
include_dirs=[numpy.get_include(),
os.path.join(basedir, "include")],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
language="c",
)
"""
setup(
name='ctools',
ext_modules=[Extension(name="_ctools",
sources=src,
include_dirs=[numpy.get_include(),
os.path.join(os.getcwd(),"include")],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
language="c",
)] ,
cmdclass={'build_ext': build_ext},
)
"""
ext_modules.append(module)
def build_xas_xas(ext_modules):
basedir = os.path.join('PyMca5', 'PyMcaPhysics','xas', '_xas')
c_files = [os.path.join(basedir, 'src', 'polspl.c'),
os.path.join(basedir, 'src', 'bessel0.c')]
if build_ext:
src = [os.path.join(basedir, 'cython','_xas.pyx')]
else:
src = []
for fname in glob.glob(os.path.join(basedir, 'cython','*.c')):
src.append(os.path.join(basedir, 'cython', os.path.basename(fname)))
src += c_files
if sys.platform == 'win32':
extra_compile_args = []
extra_link_args = []
else:
extra_compile_args = []
extra_link_args = []
module = Extension(name="PyMca5.PyMcaPhysics.xas._xas",
sources=src,
include_dirs=[numpy.get_include(),
os.path.join(basedir, "include")],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
language="c",
)
ext_modules.append(module)
ext_modules = []
if sys.version < '3.0':
build_FastEdf(ext_modules)
build_specfile(ext_modules)
build_specfit(ext_modules)
build_sps(ext_modules)
build_PyMcaIOHelper(ext_modules)
if LOCAL_OBJECT3D:
try:
build_Object3DCTools(ext_modules)
build_Object3DQhull(ext_modules)
for python_file in glob.glob('PyMca5/Object3D/*.py'):
if python_file in ['setup.py', 'cx_setup.py']:
continue
m = "PyMca5.Object3D.%s" % os.path.basename(python_file)[:-3]
py_modules.append(m)
for python_file in glob.glob('PyMca5/Object3D/Object3DPlugins/*.py'):
m = "PyMca5.Object3D.Object3DPlugins.%s" %\
os.path.basename(python_file)[:-3]
py_modules.append(m)
except:
print("Object3D Module could not be built")
print(sys.exc_info())
build_PyMcaSciPy(ext_modules)
build_plotting_ctools(ext_modules)
build_xas_xas(ext_modules)
class smart_build_py(build_py):
def run (self):
toReturn = build_py.run(self)
global PYMCA_DATA_DIR
global PYMCA_DOC_DIR
global PYMCA_INSTALL_DIR
defaultPath = os.path.join('PyMca5','PyMcaData')
if (PYMCA_DATA_DIR == defaultPath) or\
(PYMCA_DOC_DIR == defaultPath):
#default, just make sure the complete path is there
install_cmd = self.get_finalized_command('install')
PYMCA_INSTALL_DIR = getattr(install_cmd, 'install_lib')
#packager should have given the complete path
#in other cases
if PYMCA_DATA_DIR == defaultPath:
PYMCA_DATA_DIR = os.path.join(PYMCA_INSTALL_DIR,
PYMCA_DATA_DIR)
if PYMCA_DOC_DIR == defaultPath:
#default, just make sure the complete path is there
PYMCA_DOC_DIR = os.path.join(PYMCA_INSTALL_DIR,
PYMCA_DOC_DIR)
target = os.path.join(self.build_lib, "PyMca5", "PyMcaDataDir.py")
fid = open(target,'r')
content = fid.readlines()
fid.close()
fid = open(target,'w')
for line in content:
lineToBeWritten = line
txt = 'DATA_DIR_FROM_SETUP'
if txt in line:
lineToBeWritten = line.replace(txt, PYMCA_DATA_DIR)
txt = 'DOC_DIR_FROM_SETUP'
if txt in line:
lineToBeWritten = line.replace(txt, PYMCA_DOC_DIR)
fid.write(lineToBeWritten)
fid.close()
return toReturn
# data_files fix from http://wiki.python.org/moin/DistutilsInstallDataScattered
class smart_install_data(install_data):
if USING_SETUPTOOLS:
def initialize_options (self):
self.outfiles = []
self.data_files = data_files
def finalize_options(self):
pass
def get_outputs(self):
return self.outfiles
def run(self):
global PYMCA_INSTALL_DIR
global PYMCA_DATA_DIR
global PYMCA_DOC_DIR
#need to change self.install_dir to the library dir
install_cmd = self.get_finalized_command('install')
self.install_dir = getattr(install_cmd, 'install_lib')
PYMCA_INSTALL_DIR = self.install_dir
print("PyMca to be installed in %s" % self.install_dir)
#cleanup old stuff if present
pymcaOld = os.path.join(PYMCA_INSTALL_DIR, "PyMca5", "Plugins1D")
if os.path.exists(pymcaOld):
for f in glob.glob(os.path.join(pymcaOld,"*.py")):
print("Removing previously installed file %s" % f)
os.remove(f)
for f in glob.glob(os.path.join(pymcaOld,"*.pyc")):
print("Removing previously installed file %s" % f)
os.remove(f)
print("Removing previously installed directory %s" % pymcaOld)
os.rmdir(pymcaOld)
pymcaOld = os.path.join(PYMCA_INSTALL_DIR, "PyMca5", "PyMca.py")
if os.path.exists(pymcaOld):
print("Removing previously installed file %s" % pymcaOld)
os.remove(pymcaOld)
pymcaOld += "c"
if os.path.exists(pymcaOld):
print("Removing previously installed file %s" % pymcaOld)
os.remove(pymcaOld)
return install_data.run(self)
# smart_install_scripts
if USE_SMART_INSTALL_SCRIPTS:
class smart_install_scripts(install_scripts):
if USING_SETUPTOOLS:
def initialize_options (self):
self.outfiles = []
def finalize_options(self):
pass
def get_outputs(self):
return self.outfiles
def run (self):
global PYMCA_SCRIPTS_DIR
#I prefer not to translate the python used during the build
#process for the case of having an installation on a disk shared
#by different machines and starting python from a shell script
#that positions the environment
from distutils import log
from stat import ST_MODE
install_cmd = self.get_finalized_command('install')
#This is to ignore the --install-scripts keyword
#I do not know if to leave it optional ...
if False:
self.install_dir = os.path.join(getattr(install_cmd, 'install_lib'), 'PyMca5')
self.install_dir = os.path.join(self.install_dir, 'bin')
else:
self.install_dir = getattr(install_cmd, 'install_scripts')
self.install_data = getattr(install_cmd, 'install_data')
if "." in self.install_dir:
self.install_dir = os.path.abspath(self.install_dir)
if "." in self.install_data:
self.install_data = os.path.abspath(self.install_data)
global PYMCA_INSTALL_DIR
if "." in PYMCA_INSTALL_DIR:
PYMCA_INSTALL_DIR = os.path.abspath(PYMCA_INSTALL_DIR)
PYMCA_SCRIPTS_DIR = self.install_dir
PYMCA_DATA_DIR = self.install_data
if sys.platform != "win32":
print("PyMca scripts to be installed in %s" % self.install_dir)
self.outfiles = self.copy_tree(self.build_dir, self.install_dir)
self.outfiles = []
for filein in glob.glob('PyMca5/scripts/*'):
filedest = os.path.join(self.install_dir, os.path.basename(filein))
if os.path.exists(filedest):
os.remove(filedest)
moddir = os.path.join(PYMCA_INSTALL_DIR, "PyMca5", "PyMcaGui")
if 0:
f = open(filein, 'r')
modfile = f.readline().replace("\n","")
f.close()
else:
basename = os.path.basename(filein)
if basename.startswith('pymcabatch'):
modfile = os.path.join("pymca", 'PyMcaBatch.py')
elif basename.startswith('pymcapostbatch') or\
basename.startswith('rgbcorrelator'):
modfile = os.path.join("pymca", 'PyMcaPostBatch.py')
elif basename.startswith('pymcaroitool'):
modfile = os.path.join("pymca", 'QStackWidget.py')
elif basename.startswith('mca2edf'):
modfile = os.path.join("pymca", 'Mca2Edf.py')
elif basename.startswith('edfviewer'):
modfile = os.path.join("pymca", 'EdfFileSimpleViewer.py')
elif basename.startswith('peakidentifier'):
modfile = os.path.join("physics", "xrf", 'PeakIdentifier.py')
elif basename.startswith('elementsinfo'):
modfile = os.path.join("physics", "xrf", 'ElementsInfo.py')
elif basename.startswith('pymca'):
modfile = os.path.join("pymca", 'PyMcaMain.py')
else:
print("ignored %s" % filein)
continue
text = "#!/bin/bash\n"
text += "export PYTHONPATH=%s:${PYTHONPATH}\n" % PYMCA_INSTALL_DIR
#deal with sys.executables not named python
text += "exec %s %s $*\n" % (
sys.executable,
os.path.join(moddir, modfile)
)
f=open(filedest, 'w')
f.write(text)
f.close()
#self.copy_file(filein, filedest)
self.outfiles.append(filedest)
if os.name == 'posix':
# Set the executable bits (owner, group, and world) on
# all the scripts we just installed.
for ffile in self.get_outputs():
if self.dry_run:
log.info("changing mode of %s", ffile)
else:
# python 2.5 does not accept next line
#mode = ((os.stat(ffile)[ST_MODE]) | 0o555) & 0o7777
mode = ((os.stat(ffile)[ST_MODE]) | 365) & 4095
log.info("changing mode of %s to %o", ffile, mode)
os.chmod(ffile, mode)
# man pages handling
def abspath(*path):
"""A method to determine absolute path for a given relative path to the
directory where this setup.py script is located"""
setup_dir = os.path.dirname(os.path.abspath(__file__))
return os.path.join(setup_dir, *path)
class install_man(Command):
user_options = [
('install-dir=', 'd', 'base directory for installing man page files')]
def initialize_options(self):
self.install_dir = None
if USING_SETUPTOOLS:
self.outfiles = []
def finalize_options(self):
self.set_undefined_options('install',
('install_man', 'install_dir'))
if USING_SETUPTOOLS:
def get_outputs(self):
return self.outfiles
def run(self):
if self.install_dir is None:
return
src_man_dir = abspath('doc', 'man')
man_elems = os.listdir(src_man_dir)
man_pages = []
for f in man_elems:
f = os.path.join(src_man_dir,f)
if not os.path.isfile(f):
continue
if not f.endswith(".1"):
continue
man_pages.append(f)
install_dir = os.path.join(self.install_dir, 'man1')
if not os.path.isdir(install_dir):
os.makedirs(install_dir)
for man_page in man_pages:
self.copy_file(man_page, install_dir)
class install(dftinstall):
user_options = list(dftinstall.user_options)
user_options.extend([
('install-man=', None, 'installation directory for Unix man pages')])
def initialize_options(self):
self.install_man = None
dftinstall.initialize_options(self)
def finalize_options(self):
# We do a hack here. We cannot trust the 'install_base' value because it
# is not always the final target. For example, in unix, the install_base
# is '/usr' and all other install_* are directly relative to it. However,
# in unix-local (like ubuntu) install_base is still '/usr' but, for
# example, install_data, is '$install_base/local' which breaks everything.
#
# The hack consists in using install_data instead of install_base since
# install_data seems to be, in practice, the proper install_base on all
# different systems.
global USE_SMART_INSTALL_SCRIPTS
dftinstall.finalize_options(self)
if os.name != "posix":
if self.install_man is not None:
self.warn("install-man option ignored on this platform")
self.install_man = None
else:
if self.install_man is None:
if not USE_SMART_INSTALL_SCRIPTS:
# if one is installing the scripts somewhere else
# he can be smart enough to pass install_man
self.install_man = os.path.join(self.install_data,\
'share', 'man')
if self.install_man is not None:
if not os.path.exists(self.install_man):
try:
os.makedirs(self.install_man)
except:
#we'll get the error in the next check
pass
#check if we can write
if not os.access(self.install_man, os.W_OK):
print("********************************")
print("")
print("No permission to write man pages")
print("")
print("********************************")
self.install_man = None
self.dump_dirs("Installation directories")
def expand_dirs(self):
dftinstall.expand_dirs(self)
self._expand_attrs(['install_man'])
def has_man(self):
return os.name == "posix"
sub_commands = list(dftinstall.sub_commands)
sub_commands.append(('install_man', has_man))
# end of man pages handling
cmdclass = {'install_data':smart_install_data,
'build_py':smart_build_py}
if build_ext is not None:
cmdclass['build_ext'] = build_ext
if USE_SMART_INSTALL_SCRIPTS:
# typical use of user without superuser privileges
cmdclass['install_scripts'] = smart_install_scripts
if os.name == "posix":
cmdclass['install'] = install
cmdclass['install_man'] = install_man
if DEBIAN_SRC:
from distutils.command.sdist import sdist
class sdist_debian(sdist):
def prune_file_list(self):
sdist.prune_file_list(self)
directories = ["third-party/fisx/python/cython",
"PyMca5/PyMcaGraph/ctools/_ctools/cython",
"PyMca5/PyMcaPhysics/xas/_xas/cython"]
print("Removing files for debian source distribution")
for directory in directories:
for pyxfile in glob.glob(os.path.join(directory, "*.pyx")):
for extension in [".c", ".cpp"]:
cf = os.path.splitext(pyxfile)[0] + extension
if os.path.isfile(cf):
print("Excluding file %s" % cf)
self.filelist.exclude_pattern(pattern=cf)
cmdclass['sdist'] = sdist_debian
description = "Mapping and X-Ray Fluorescence Analysis"
long_description = """Stand-alone application and Python tools for interactive and/or batch processing analysis of X-Ray Fluorescence Spectra. Graphical user interface (GUI) and batch processing capabilities provided
"""
#######################
# build_doc commands #
#######################
try:
import sphinx
import sphinx.util.console
sphinx.util.console.color_terminal = lambda: False
from sphinx.setup_command import BuildDoc
except:
sphinx = None
if sphinx:
class build_doc(BuildDoc):
def run(self):
# make sure the python path is pointing to the newly built
# code so that the documentation is built on this and not a
# previously installed version
build = self.get_finalized_command('build')
sys.path.insert(0, os.path.abspath(build.build_lib))
# Build the Users Guide in HTML and TeX format
for builder in ('html', 'latex'):
self.builder = builder
self.builder_target_dir = os.path.join(self.build_dir, builder)
self.mkpath(self.builder_target_dir)
builder_index = 'index_{0}.txt'.format(builder)
BuildDoc.run(self)
sys.path.pop(0)
cmdclass['build_doc'] = build_doc
classifiers = ["Development Status :: 5 - Production/Stable",
"Programming Language :: Python :: 2",
"Programming Language :: Python :: 3",
"Intended Audience :: Developers",
"Intended Audience :: End Users/Desktop",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Topic :: Software Development :: Libraries :: Python Modules",
"Operating System :: Microsoft :: Windows",
"Operating System :: Unix",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX",
"Topic :: Scientific/Engineering :: Chemistry",
"Topic :: Scientific/Engineering :: Physics",
"Topic :: Scientific/Engineering :: Visualization",
]
install_requires = ["numpy", "matplotlib", "fisx>=1.1.2"]
setup_requires = ["numpy"]
distrib = setup(name="PyMca5",
version= __version__,
description = description,
author = "V. Armando Sole",
author_email="[email protected]",
license= "MIT",
url = "http://pymca.sourceforge.net",
download_url="https://github.com/vasole/pymca/archive/v%s.tar.gz" % __version__,
long_description = long_description,
packages = packages,
platforms='any',
ext_modules = ext_modules,
data_files = data_files,
## package_data = package_data,
## package_dir = {'':'PyMca', 'PyMca.tests':'tests'},
cmdclass = cmdclass,
scripts=script_files,
py_modules=py_modules,
classifiers=classifiers,
install_requires=install_requires,
setup_requires=setup_requires,
)
try:
print("PyMca is installed in %s " % PYMCA_INSTALL_DIR)
print("PyMca data files are installed in %s " % PYMCA_DATA_DIR)
print("HTML help files are installed in %s " % PYMCA_DOC_DIR)
except:
#I really do not see how this may happen but ...
pass
if fisx_src is None or ("sdist" in sys.argv):
sys.exit(0)
#
# What follows is ugly and it is not intended for
# use outside the ESRF
#
# fisx should be installed as a separated Debian/RedHat/... package
#
fisx_src = os.path.abspath(fisx_src)
# reproduce fisx setup.py file here ...
# deal with required data
#for the time being there is no doc directory
FISX_DATA_DIR = os.getenv("FISX_DATA_DIR")
FISX_DOC_DIR = os.getenv("FISX_DOC_DIR")
if FISX_DATA_DIR is None:
FISX_DATA_DIR = os.path.join('fisx', 'fisx_data')
if FISX_DOC_DIR is None:
FISX_DOC_DIR = os.path.join('fisx', 'fisx_data')
def getFisxVersion():
cppDir = os.path.join(fisx_src, "src")
content = open(os.path.join(cppDir, "fisx_version.h"), "r").readlines()
for line in content:
if "FISX_VERSION_STR" in line:
version = line.split("FISX_VERSION_STR")[-1].replace("\n","")
version = version.replace(" ","")
return version[1:-1]
__version__ = getFisxVersion()
print("Processing fisx library %s\n" % __version__)
class smart_build_fisx_py(build_py):
def run (self):
toReturn = build_py.run(self)
global FISX_DATA_DIR
global FISX_DOC_DIR
global INSTALL_DIR
defaultDataPath = os.path.join('fisx', 'fisx_data')
defaultDocPath = os.path.join('fisx', 'fisx_data')
if (FISX_DATA_DIR == defaultDataPath) or\
(FISX_DOC_DIR == defaultDocPath):
#default, just make sure the complete path is there
install_cmd = self.get_finalized_command('install')
INSTALL_DIR = getattr(install_cmd, 'install_lib')
#packager should have given the complete path
#in other cases
if FISX_DATA_DIR == defaultDataPath:
FISX_DATA_DIR = os.path.join(INSTALL_DIR, FISX_DATA_DIR)
if FISX_DOC_DIR == defaultDocPath:
#default, just make sure the complete path is there
FISX_DOC_DIR = os.path.join(INSTALL_DIR, FISX_DOC_DIR)
target = os.path.join(self.build_lib, "fisx", "DataDir.py")
fid = open(target,'r')
content = fid.readlines()
fid.close()
fid = open(target,'w')
for line in content:
lineToBeWritten = line
if lineToBeWritten.startswith("FISX_DATA_DIR"):
lineToBeWritten = "FISX_DATA_DIR = r'%s'\n" % FISX_DATA_DIR
if line.startswith("FISX_DOC_DIR"):
lineToBeWritten = "FISX_DOC_DIR = r'%s'\n" % FISX_DOC_DIR
fid.write(lineToBeWritten)
fid.close()
return toReturn
class smart_install_fisx_data(install_data):