DESCRIPTION

Package: Ularcirc
Type: Package
Title: Shiny app for canonical and back splicing analysis (i.e. circular and 
      mRNA analysis)
Version: 1.5.1
Authors@R: person ("David", "Humphreys", email="d.humphreys@victorchang.edu.au", 
      role = c("aut","cre"))
Description: Ularcirc reads in STAR aligned splice junction files and provides
    visualisation and analysis tools for splicing analysis. Users can assess
    backsplice junctions and forward canonical junctions.
biocViews: DataRepresentation,Visualization, Genetics, Sequencing, Annotation,
    Coverage, AlternativeSplicing, DifferentialSplicing
License: file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.4.0),data.table
Imports: AnnotationHub, 
        AnnotationDbi, BiocGenerics,
        Biostrings,
        BSgenome,
        data.table (>= 1.9.4), DT,
        GenomicFeatures, GenomeInfoDb, GenomeInfoDbData, 
        GenomicAlignments, GenomicRanges,
        ggplot2, ggrepel, gsubfn,
        mirbase.db, moments,
        Organism.dplyr,
		R.utils,
        S4Vectors, 
        shiny, shinydashboard,
        shinyFiles, shinyjs,
        Sushi,
        yaml
RoxygenNote: 7.0.2.9000
Suggests: BSgenome.Hsapiens.UCSC.hg38, 
          BiocStyle,
          httpuv,
          knitr, 
          org.Hs.eg.db,
          rmarkdown, 
          TxDb.Hsapiens.UCSC.hg38.knownGene
VignetteBuilder: knitr