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scImpute-news.Rmd
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scImpute-news.Rmd
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---
title: "scImpute Updates"
author: "Wei Vivian Li"
date: "`r Sys.Date()`"
output: rmarkdown::html_vignette
#output: pdf_document
---
## Updates
> 2018/08/15:
- Version 0.0.9 is released!
- More robust implementation of dimension reduction.
- Faster calculation of cell similarity.
> 2018/06/27:
- Version 0.0.8 is released!
- Faster implementation of dimension reduction.
> 2018/06/08:
- Version 0.0.7 is released!
- New option for application on TPM values.
> 2018/03/16:
+ Version 0.0.6 is released!
+ The scImpute method is published at [*Nature Communications*](https://www.nature.com/articles/s41467-018-03405-7).
+ scImpute now supports input and output in the format of R objects (.rds).
> 2018/01/12:
+ Version 0.0.5 is released!
+ It is now possible to apply scImpute on just one cell population by setting `Kcluster = 1`.
> 2017/10/27:
+ Version 0.0.4 is released!
+ scImpute now supports multi-code parallelism.
> 2017/10/22:
+ Version 0.0.3 is released!
+ Estimation of dropout probabilities is more accurate.
+ Imputation step is more robust.
+ `scimpute()` incorporates a new parameter `Kcluster` to specify the number of cell subpopulations.
+ `scImpute` is now able to detect outlier cells.
> 2017/07/01:
+ Version 0.0.2 is released!
+ This version speeds up the first step in `scImpute` and program now completes in a few seconds when applied to a dataset with 10,000 genes and 100 cells (using single core).