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BBa_T9002.xml
executable file
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BBa_T9002.xml
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<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:s="http://sbols.org/v1#" xmlns:so="http://purl.obolibrary.org/obo/" xmlns:map="http://convert.sbols.org/xml/" xmlns:pr="http://partsregistry.org/" xmlns:prt="http://purl.obolibrary.org/obo/" xmlns:prp="http://partsregistry.org/part/" xmlns:pra="http://partsregistry.org/anot/" xmlns:prs="http://partsregistry.org/seq/" xmlns:prf="http://partsregistry.org/feat/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_T9002">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/signalling"/>
<s:displayId>BBa_T9002</s:displayId>
<s:name>T9002</s:name>
<s:description>GFP Producer Controlled by 3OC6HSL Receiver Device</s:description>
<s:dnaSequence>
<s:DnaSequence rdf:about="http://partsregistry.org/seq/partseq_5591">
<s:nucleotides>tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagaaagaggagaaatactagatgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcactactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagacctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaatactagagtcacacaggaaagtactagatgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata</s:nucleotides>
</s:DnaSequence>
</s:dnaSequence>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_187_1">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_151_2"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_R0040">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0005836"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/regulatory"/>
<s:displayId>BBa_R0040</s:displayId>
<s:name>p(tetR)</s:name>
<s:description>TetR repressible promoter</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_151_2">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_161_3"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_B0034">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000552"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/rbs"/>
<s:displayId>BBa_B0034</s:displayId>
<s:description>RBS (Elowitz 1999) -- defines RBS efficiency</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_161_3">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_603_4"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_C0062">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000316"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/coding"/>
<s:displayId>BBa_C0062</s:displayId>
<s:name>luxr</s:name>
<s:description>luxR repressor/activator, (no LVA?)</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_603_4">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_145_5"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_B0010">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000141"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/terminator"/>
<s:displayId>BBa_B0010</s:displayId>
<s:description>T1 from E. coli rrnB</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_145_5">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_192_6"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_B0012">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000141"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/terminator"/>
<s:displayId>BBa_B0012</s:displayId>
<s:description>TE from coliphageT7</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_192_6">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_149_7"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_R0062">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0005836"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/regulatory"/>
<s:displayId>BBa_R0062</s:displayId>
<s:name>lux pR</s:name>
<s:description>Promoter (luxR & HSL regulated -- lux pR)</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_149_7">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_5309_8"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_B0032">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/rbs"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000552"/>
<s:displayId>BBa_B0032</s:displayId>
<s:description>RBS.3 (medium) -- derivative of BBa_0030</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_5309_8">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_603_9"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_E0040">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000316"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/coding"/>
<s:displayId>BBa_E0040</s:displayId>
<s:name>GFP</s:name>
<s:description>green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_603_9">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_145_10"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_B0010">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000141"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/terminator"/>
<s:displayId>BBa_B0010</s:displayId>
<s:description>T1 from E. coli rrnB</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_145_10">
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_B0012">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000141"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/terminator"/>
<s:displayId>BBa_B0012</s:displayId>
<s:description>TE from coliphageT7</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_5114_1">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_5339_2"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_F2620">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/signalling"/>
<s:displayId>BBa_F2620</s:displayId>
<s:description>3OC<sub>6</sub>HSL -> PoPS Receiver</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_5339_2">
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_E0240">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/reporter"/>
<s:displayId>BBa_E0240</s:displayId>
<s:name>GFP report</s:name>
<s:description>GFP generator</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_5114_1">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_5339_2"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_F2620">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/signalling"/>
<s:displayId>BBa_F2620</s:displayId>
<s:description>3OC<sub>6</sub>HSL -> PoPS Receiver</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/an_5591_5339_2">
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_E0240">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/reporter"/>
<s:displayId>BBa_E0240</s:displayId>
<s:name>GFP report</s:name>
<s:description>GFP generator</s:description>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/sc_5591_1_1">
<s:precedes rdf:resource="http://partsregistry.org/anot/an_5591_5339_2"/>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/RFC_10">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/scar"/>
<s:displayId>RFC_10</s:displayId>
<s:name>[10]</s:name>
<s:dnaSequence>
<s:DnaSequence rdf:about="http://partsregistry.org/seq/scarseq_1">
<s:nucleotides>tactagag</s:nucleotides>
</s:DnaSequence>
</s:dnaSequence>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/f_1565164">
<s:bioStart>1</s:bioStart>
<s:bioEnd>19</s:bioEnd>
<s:strand>+</s:strand>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/feat/f_1565164">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000409"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/binding"/>
<s:displayId>f_1565164</s:displayId>
<s:name>TetR 1</s:name>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/f_1565165">
<s:bioStart>1</s:bioStart>
<s:bioEnd>54</s:bioEnd>
<s:strand>+</s:strand>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/part/BBa_R0040">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/biobrick"/>
<s:displayId>BBa_R0040</s:displayId>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/f_1565166">
<s:bioStart>20</s:bioStart>
<s:bioEnd>25</s:bioEnd>
<s:strand>+</s:strand>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/feat/f_1565166">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000167"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/promoter"/>
<s:displayId>f_1565166</s:displayId>
<s:name>-35</s:name>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/f_1565167">
<s:bioStart>26</s:bioStart>
<s:bioEnd>44</s:bioEnd>
<s:strand>+</s:strand>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/feat/f_1565167">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000409"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/binding"/>
<s:displayId>f_1565167</s:displayId>
<s:name>TetR 2</s:name>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
<s:SequenceAnnotation rdf:about="http://partsregistry.org/anot/f_1565168">
<s:bioStart>43</s:bioStart>
<s:bioEnd>48</s:bioEnd>
<s:strand>+</s:strand>
<s:subComponent>
<s:DnaComponent rdf:about="http://partsregistry.org/feat/f_1565168">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/SO_0000167"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/promoter"/>
<s:displayId>f_1565168</s:displayId>
<s:name>-10</s:name>
</s:DnaComponent>
</s:subComponent>
</s:SequenceAnnotation>
</s:annotation>
<s:annotation>
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