diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..6fddca0 --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,7 @@ +version: 2 +updates: + # Maintain dependencies for GitHub Actions + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "weekly" diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml new file mode 100644 index 0000000..addabaa --- /dev/null +++ b/.github/workflows/cd.yml @@ -0,0 +1,53 @@ +name: CD + +on: + workflow_dispatch: + pull_request: + push: + branches: + - main + release: + types: + - published + +jobs: + dist: + needs: [pre-commit] + name: Distribution build + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + + - name: Build sdist and wheel + run: pipx run build + + - uses: actions/upload-artifact@v3 + with: + path: dist + + - name: Check products + run: pipx run twine check dist/* + + publish: + needs: [dist] + name: Publish to PyPI + environment: pypi + permissions: + id-token: write + runs-on: ubuntu-latest + if: github.event_name == 'release' && github.event.action == 'published' + + steps: + - uses: actions/download-artifact@v3 + with: + name: artifact + path: dist + + - uses: pypa/gh-action-pypi-publish@release/v1 + if: github.event_name == 'release' && github.event.action == 'published' + with: + # Remove this line to publish to PyPI + repository-url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 0000000..c463184 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,54 @@ +name: CI + +on: + workflow_dispatch: + pull_request: + push: + branches: + - main + +jobs: + pre-commit: + name: Format + lint code + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + - uses: actions/setup-python@v4 + with: + python-version: "3.x" + - uses: pre-commit/action@v3.0.0 + with: + extra_args: --hook-stage manual --all-files + + checks: + name: Run tests for Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} + runs-on: ${{ matrix.runs-on }} + needs: [pre-commit] + strategy: + fail-fast: false + matrix: + python-version: [3.10, 3.12] # test oldest and latest supported versions + runs-on: [ubuntu-latest] # can be extended to other OSes, e.g. [ubuntu-latest, macos-latest] + + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + + - uses: actions/setup-python@v4 + with: + python-version: ${{ matrix.python-version }} + allow-prereleases: true + + - name: Install package + run: python -m pip install .[test] + + - name: Test package + run: >- + python -m pytest -ra --cov --cov-report=xml --cov-report=term + --durations=20 + + - name: Upload coverage report + uses: codecov/codecov-action@v3.1.4 diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..44afcc2 --- /dev/null +++ b/.gitignore @@ -0,0 +1,162 @@ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + +# setuptools_scm +src/*/_version.py + + +# ruff +.ruff_cache/ + +# OS specific stuff +.DS_Store +.DS_Store? +._* +.Spotlight-V100 +.Trashes +ehthumbs.db +Thumbs.db + +# Common editor files +*~ +*.swp + + +# Misc +.copier-answers.yml diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..380cacb --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,32 @@ +ci: + autoupdate_commit_msg: "chore: update pre-commit hooks" + autofix_commit_msg: "style: pre-commit fixes" + +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: "v4.4.0" + hooks: + - id: check-added-large-files + - id: check-case-conflict + - id: check-merge-conflict + - id: check-symlinks + - id: check-yaml + - id: debug-statements + - id: end-of-file-fixer + - id: mixed-line-ending + - id: name-tests-test + args: ["--pytest-test-first"] + - id: requirements-txt-fixer + - id: trailing-whitespace + + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: "v0.2.0" + hooks: + # first, lint + autofix + - id: ruff + types_or: [python, pyi, jupyter] + args: ["--fix", "--show-fixes"] + # then, format + - id: ruff-format + + diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000..2ccfbfe --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,47 @@ +# Code of Conduct + +We value the participation of every member of our community and want to ensure +that every contributor has an enjoyable and fulfilling experience. Accordingly, +everyone who participates in the acbm project is expected to show respect and courtesy to other community members at all time. + +In the interest of fostering an open and welcoming environment, we as +contributors and maintainers are dedicated to making participation in our project +a harassment-free experience for everyone, regardless of age, body +size, disability, ethnicity, sex characteristics, gender identity and expression, +level of experience, education, socio-economic status, nationality, personal +appearance, race, religion, or sexual identity and orientation. + +## Our Standards + +Examples of behaviour that contributes to creating a positive environment +include: + +- Using welcoming and inclusive language +- Being respectful of differing viewpoints and experiences +- Gracefully accepting constructive criticism +- Focusing on what is best for the community +- Showing empathy towards other community members + +Examples of unacceptable behaviour by participants include: + +- The use of sexualized language or imagery and unwelcome sexual attention or + advances +- Trolling, insulting/derogatory comments, and personal or political attacks +- Public or private harassment +- Publishing others' private information, such as a physical or electronic + address, without explicit permission +- Other conduct which could reasonably be considered inappropriate in a + professional setting + + + +## Attribution + +This Code of Conduct is adapted from the [Turing Data Stories Code of Conduct](https://github.com/alan-turing-institute/TuringDataStories/blob/main/CODE_OF_CONDUCT.md) which is based on the [scona project Code of Conduct](https://github.com/WhitakerLab/scona/blob/master/CODE_OF_CONDUCT.md) +and the [Contributor Covenant](https://www.contributor-covenant.org), version [1.4](https://www.contributor-covenant.org/version/1/4/code-of-conduct.html) \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..6b2a169 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,50 @@ +See the [Scientific Python Developer Guide][spc-dev-intro] for a detailed +description of best practices for developing scientific packages. + +[spc-dev-intro]: https://scientific-python-cookie.readthedocs.io/guide/intro + +# Setting up a development environment manually + +You can set up a development environment by running: +```zsh +poetry install +``` + +# Post setup + +You should prepare pre-commit, which will help you by checking that commits pass +required checks: + +```bash +pip install pre-commit # or brew install pre-commit on macOS +pre-commit install # this will install a pre-commit hook into the git repo +``` + +You can also/alternatively run `pre-commit run` (changes only) or +`pre-commit run --all-files` to check even without installing the hook. + +# Testing + +Use pytest to run the unit checks: + +```bash +pytest +``` + +# Coverage + +Use pytest-cov to generate coverage reports: + +```bash +pytest --cov=acbm +``` + +# Pre-commit + +This project uses pre-commit for all style checking. Install pre-commit and run: + +```bash +pre-commit run -a +``` + +to check all files. diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..97257a0 --- /dev/null +++ b/LICENSE @@ -0,0 +1,202 @@ + + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. Definitions. + + "License" shall mean the terms and conditions for use, reproduction, + and distribution as defined by Sections 1 through 9 of this document. + + "Licensor" shall mean the copyright owner or entity authorized by + the copyright owner that is granting the License. + + "Legal Entity" shall mean the union of the acting entity and all + other entities that control, are controlled by, or are under common + control with that entity. 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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright 2024 Hussein Mahfouz + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. diff --git a/README.md b/README.md new file mode 100644 index 0000000..5e5c25a --- /dev/null +++ b/README.md @@ -0,0 +1,41 @@ +# acbm + +[![Actions Status][actions-badge]][actions-link] +[![PyPI version][pypi-version]][pypi-link] +[![PyPI platforms][pypi-platforms]][pypi-link] + +A package to create activity-based models (for transport demand modelling) + +## Installation + +```bash +python -m pip install acbm +``` + +From source: +```bash +git clone https://github.com/alan-turing-institute/acbm +cd acbm +poetry install +``` + + +## Usage + + +## Contributing + +See [CONTRIBUTING.md](CONTRIBUTING.md) for instructions on how to contribute. + +## License + +Distributed under the terms of the [Apache license](LICENSE). + + + +[actions-badge]: https://github.com/alan-turing-institute/acbm/workflows/CI/badge.svg +[actions-link]: https://github.com/alan-turing-institute/acbm/actions +[pypi-link]: https://pypi.org/project/acbm/ +[pypi-platforms]: https://img.shields.io/pypi/pyversions/acbm +[pypi-version]: https://img.shields.io/pypi/v/acbm + diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..e6950b4 --- /dev/null +++ b/poetry.lock @@ 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