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Add Yersinia reference strains to grandeur_ref #203

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DrB-S opened this issue May 31, 2024 · 0 comments · Fixed by #210
Closed

Add Yersinia reference strains to grandeur_ref #203

DrB-S opened this issue May 31, 2024 · 0 comments · Fixed by #210

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@DrB-S
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DrB-S commented May 31, 2024

Please add Yersinia enterocolitica, Y. pestis, and Y. pseudotuberculosis genomes to grandeur_ref. When I ran Grandeur on several Yersinia strains, the mash & fastani tools retrieved Serratia as the closest relative, presumably from grandeur_ref.

Here is the Y. enterocolitica strain:
GCF_025758635.1_ASM2575863v1_genomic.fna

NZ_CP107102.1 Yersinia enterocolitica strain NW56 chromosome
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Update20240626 UPHL-BioNGS/Grandeur
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@DrB-S