From f731820e46369074d4ff14bed59c9c4433d19704 Mon Sep 17 00:00:00 2001
From: eriny <erin.olde@gmail.com>
Date: Wed, 26 Jun 2024 16:52:16 -0600
Subject: [PATCH] removed flag

---
 modules/local/kleborate.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/local/kleborate.nf b/modules/local/kleborate.nf
index 177cd0d..a8d84ad 100644
--- a/modules/local/kleborate.nf
+++ b/modules/local/kleborate.nf
@@ -7,7 +7,7 @@ process kleborate {
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
-  tuple val(meta), file(contig), val(flag), file(script)
+  tuple val(meta), file(contig), file(script)
 
   output:
   path "kleborate/*_results.tsv"   , emit: collect, optional: true
@@ -16,7 +16,7 @@ process kleborate {
   path "versions.yml"              , emit: versions
 
   when:
-  (task.ext.when == null || task.ext.when) && flag =~ 'found'
+  (task.ext.when == null || task.ext.when)
 
   shell:
   def args   = task.ext.args   ?: '--all'