From f2d0e8306db7ef154f01089eb5d63dfea60ee564 Mon Sep 17 00:00:00 2001
From: Erin Young <erin.olde@gmail.com>
Date: Thu, 2 Mar 2023 12:35:14 -0700
Subject: [PATCH] fixed variable typo

---
 .github/workflows/ecoli.yml      | 5 ++---
 .github/workflows/salmonella.yml | 2 +-
 .github/workflows/vibrio.yml     | 2 +-
 3 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/ecoli.yml b/.github/workflows/ecoli.yml
index 86a7cb9..ab25b2f 100644
--- a/.github/workflows/ecoli.yml
+++ b/.github/workflows/ecoli.yml
@@ -25,14 +25,13 @@ jobs:
           docker --version
           
           mkdir fastas 
-
-          for accesion in GCA_009738455.1_ASM973845v1 GCA_003019175.1_ASM301917v1 GCA_023823105.1_ASM2382310v1
+          for accession in GCA_009738455.1_ASM973845v1 GCA_003019175.1_ASM301917v1 GCA_023823105.1_ASM2382310v1
           do
             all=$(echo $accession | cut -f 2 -d "_")
             fir=$(echo $all | cut -c 1-3)
             mid=$(echo $all | cut -c 4-6)
             end=$(echo $all | cut -c 7-9)
-            wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/$fir/$mid/$end/$accession/${accession}_genomic.fna.gz
+            wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/${fir}/${mid}/${end}/${accession}/${accession}_genomic.fna.gz
             gzip -d ${accession}_genomic.fna.gz
             mv ${accession}_genomic.fna fastas/.
           done
diff --git a/.github/workflows/salmonella.yml b/.github/workflows/salmonella.yml
index ff09f72..4f6eebf 100644
--- a/.github/workflows/salmonella.yml
+++ b/.github/workflows/salmonella.yml
@@ -25,7 +25,7 @@ jobs:
           docker --version
           
           mkdir fastas
-          for accesion in GCA_019710395.3_ASM1971039v3 GCA_001652385.2_ASM165238v2 GCA_013344545.1_ASM1334454v1
+          for accession in GCA_019710395.3_ASM1971039v3 GCA_001652385.2_ASM165238v2 GCA_013344545.1_ASM1334454v1
           do
             all=$(echo $accession | cut -f 2 -d "_")
             fir=$(echo $all | cut -c 1-3)
diff --git a/.github/workflows/vibrio.yml b/.github/workflows/vibrio.yml
index eabe3eb..be28c16 100644
--- a/.github/workflows/vibrio.yml
+++ b/.github/workflows/vibrio.yml
@@ -25,7 +25,7 @@ jobs:
           docker --version
           
           mkdir fastas
-          for accesion in GCA_009665515.2_ASM966551v2 GCA_009763645.1_ASM976364v1 GCA_004355205.1_ASM435520v1 GCA_009665315.1_ASM966531v1 GCA_002953375.1_ASM295337v1
+          for accession in GCA_009665515.2_ASM966551v2 GCA_009763645.1_ASM976364v1 GCA_004355205.1_ASM435520v1 GCA_009665315.1_ASM966531v1 GCA_002953375.1_ASM295337v1
           do
             all=$(echo $accession | cut -f 2 -d "_")
             fir=$(echo $all | cut -c 1-3)