From c0559b1e4f97a3069f09868b0355a6c77595c2e7 Mon Sep 17 00:00:00 2001
From: Young <erin.olde@gmail.com>
Date: Wed, 2 Oct 2024 14:00:00 -0600
Subject: [PATCH 1/2] Update nextflow.config to 4.5.24276

---
 nextflow.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index 621fb64..991d523 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -3,7 +3,7 @@ manifest {
   author                          = 'Erin Young'
   homePage                        = 'https://github.com/UPHL-BioNGS/Grandeur'
   mainScript                      = 'main.nf'
-  version                         = '4.5.24250'
+  version                         = '4.5.24276'
   defaultBranch                   = 'main'
   description                     = 'Grandeur is short-read de novo assembly pipeline with serotyping.'
   nextflowVersion                 = '!>=22.10.1'

From 1525b2e2053cb45b78629f260d908094991ac729 Mon Sep 17 00:00:00 2001
From: Young <erin.olde@gmail.com>
Date: Wed, 2 Oct 2024 14:01:15 -0600
Subject: [PATCH 2/2] Update mlst to 2.23.0-2024-10-01

---
 modules/local/mlst.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/local/mlst.nf b/modules/local/mlst.nf
index 5f0701c..891ce19 100644
--- a/modules/local/mlst.nf
+++ b/modules/local/mlst.nf
@@ -2,7 +2,7 @@ process mlst {
   tag           "${meta.id}"
   label         "process_medium"
   publishDir    params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container     'staphb/mlst:2.23.0-2024-09-01'
+  container     'staphb/mlst:2.23.0-2024-10-01'
   maxForks      10
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   time          '10m'