diff --git a/modules/local/local.nf b/modules/local/local.nf index 26dc810..98acc0c 100644 --- a/modules/local/local.nf +++ b/modules/local/local.nf @@ -43,7 +43,6 @@ process download_sra { output: tuple val(SRR), file("reads/${SRR}_{1,2}.fastq.gz"), emit: fastq path "logs/${task.process}/*.log", emit: log - path "versions.yml", emit: versions when: task.ext.when == null || task.ext.when @@ -63,11 +62,6 @@ process download_sra { wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/\${sra:0:6}/0\${sra: -2 }/${SRR}/${SRR}_2.fastq.gz mv *fastq.gz reads/. - - cat <<-END_VERSIONS > versions.yml - "${task.process}": - sratools: \$(fasterq-dump --version 2>&1 | grep -Eo '[0-9.]+') - END_VERSIONS """ } @@ -284,7 +278,7 @@ process references { tag "Preparing references" // no publishDir label "process_single" - container 'quay.io/uphl/grandeur_ref:20240124' + container 'quay.io/uphl/grandeur_ref:2024-03-07' time '10m' errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}