From 7a742fa0cba2996ec7cb8953aee3a7e395a33624 Mon Sep 17 00:00:00 2001
From: Erin Young <erin.olde@gmail.com>
Date: Wed, 24 Apr 2024 16:42:42 -0600
Subject: [PATCH] added ch_bams

---
 subworkflows/quality_assessment.nf | 1 +
 1 file changed, 1 insertion(+)

diff --git a/subworkflows/quality_assessment.nf b/subworkflows/quality_assessment.nf
index b28f5a5..34bd3a0 100755
--- a/subworkflows/quality_assessment.nf
+++ b/subworkflows/quality_assessment.nf
@@ -97,6 +97,7 @@ workflow quality_assessment {
       .set { for_versions }
 
   emit:
+    bams        = ch_bams
     for_summary = for_summary.collect()
     for_multiqc = for_multiqc.mix(quast.out.for_multiqc).collect()
     versions    = for_versions